| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1285024 | 60 (1.140) | 10 (0.190) | 10/244 | NT | 15.0% | coding (249/795 nt) | PP_1122 | OmpA family protein |
| ? | NC_002947 | = 1285063 | 54 (1.040) | coding (288/795 nt) | PP_1122 | OmpA family protein | |||||
CTACGCACAGCGATGGCAGCGCGCCCCTCAATCAAAGGACCTGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1284915‑1285024‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAAGAACTCTCGATGGCACCAAGGCCACCACCGACCAAGCCGCCCAGCAGGCTGCAGATGG < NC_002947/1285063‑1284960 CTACGCACAGCGATGGCAGCGCGCCCCTCAATCAAAGGACCTGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGGCCGCCGGCAATGGCGCCCAAGGCGCCACCACCG > 1:71966/1‑144CTACGCACAGCGATGGCAGCGCGCCCCTCAATCAAAGGACCTGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGGCCGCCGGCAATGGCGCCCAAGGCGCCACCACCG < 2:71966/144‑1 AAGGACCTGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAAG < 1:1268644/123‑1 AAGGACCTGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAAG > 2:1268644/1‑123 CCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCC < 1:271836/105‑1 CCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCC > 2:271836/1‑105 CTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCC < 1:888368/84‑1 CTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCC > 2:888368/1‑84 CATCGAGAGTTCTTCCTGGGCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAAGAACTCTCGATGGCACCAAGGCCACCACCGACCAAGCCGCCCAGCAGGCTGCAGATGG > 1:514656/1‑123 CATCGAGAGTTCTTCCTGGGCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAAGAACTCTCGATGGCACCAAGGCCACCACCGACCAAGCCGCCCAGCAGGCTGCAGATGG < 2:514656/123‑1 GCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAAGAACTCTCGATGGCACCAAGGCCACCACCGACCAAGCCGCCCAGCAGGCTGCAGAT < 1:795324/103‑1 GCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAAGAACTCTCGATGGCACCAAGGCCACCACCGACCAAGCCGCCCAGCAGGCTGCAGAT > 2:795324/1‑103 CTACGCACAGCGATGGCAGCGCGCCCCTCAATCAAAGGACCTGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1284915‑1285024‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAAGAACTCTCGATGGCACCAAGGCCACCACCGACCAAGCCGCCCAGCAGGCTGCAGATGG < NC_002947/1285063‑1284960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |