New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1579281 =	41 (0.780)	3 (0.060)	3/238	NT	6.9%	coding (2158/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	1579308 =	41 (0.810)					coding (2131/3153 nt)	ttgB	efflux pump membrane protein TtgB

GGTGCTTGAACTGGGTAACGCCACCGGCTTCGACGTGTTCCTTCAGGACCGCGGCGGTGTCGGCCACGAGAAGTTGATGGAGGCGCGCAACCAGTTCCTGGCCAAAGCTGCGCAGAGCAAGATCCTCAGCGCCGTGCGCCCGAACGGC‑CTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1579432‑1579281 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCGGGGCGAAGGCGAACAC  >  NC_002947/1579308‑1579455                                                                                                                                                                                                                                                                                                               GGTGCTTGAACTGGGTAACGCCACCGGCTTCGACGTGTTCCTTCAGGACCGCGGCGGTGTCGGCCACGAGAAGTTGATGGAGGCGCGCAACCAGTTCCTGGCCAAAGCTGCGCAGAGCAAGATCCTCAGCGCCGTGCGCCCGAACGGC‑CT                                                                                                                                                        <  1:1178372/150‑1                          GGCTTCGACGTGTTCCTTCAGGACCGCGGCGGTGTCGGCCACGAGAAGTTGATGGAGGCGCGCAACCAGTTCCTGGCCAAAGCTGCGCAGAGCAAGATCCTCAG‑GCCGTTCAAGCCCTCGGCGCTGAGGATCTTGCTCTGCGCAGCTTTG                                                                                                                               <  1:1045953/150‑1                                             AGGACCGCGGCGGTGTCGGCCACGAGAAGTTGATGGAGGCGCGCAACCAGTTCCTGGCCAAAGCTGCGCAGAGCAAGATCCTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGC                                                                                                                                        <  1:821563/122‑1                                             AGGACCGCGGCGGTGTCGGCCACGAGAAGTTGATGGAGCCGCGCAACCAGTTCCTGGCCAAAGCTGCGCAGAGCAAGATCCTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGC                                                                                                                                        >  2:821563/1‑122                                                                                                                                                        GAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCGGGGCGAAGGCGAACAC  >  1:278261/1‑150                                                                                                                                                        GAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCGGGGCGAAGGCGAACAC  >  2:252681/1‑150                                                                                                                                                                                                                                                                                                               GGTGCTTGAACTGGGTAACGCCACCGGCTTCGACGTGTTCCTTCAGGACCGCGGCGGTGTCGGCCACGAGAAGTTGATGGAGGCGCGCAACCAGTTCCTGGCCAAAGCTGCGCAGAGCAAGATCCTCAGCGCCGTGCGCCCGAACGGC‑CTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1579432‑1579281 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCGGGGCGAAGGCGAACAC  >  NC_002947/1579308‑1579455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.