New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1579281 =	41 (0.780)	3 (0.060)	3/238	NT	6.9%	coding (2158/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	1579308 =	41 (0.810)					coding (2131/3153 nt)	ttgB	efflux pump membrane protein TtgB

CACCTTCTTGACCCGGCCACGGTCGATGAAGTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGC  >  NC_002947/1579132‑1579429                                                                                                                                                      |                                                                                                                                                      cacCTTCTTGACCCGGCCACGGTCGATGAAGTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGtt                                                                                                                                                       <  1:1299560/150‑1 (MQ=255)  gtgttcgccttcgccccgccagcggtgcttgaactgggtaacgccaccggcttcgacgtgttccttcaggaccgcggcggtgtcggccacgagaagttgatggaggcgcgcaaccagttcctggccaaagctgcgcagagcaagatccTc                                                                                                                                                      >  2:252681‑M1/149‑150 (MQ=255)  gtgttcgccttcgccccgccagcggtgcttgaactgggtaacgccaccggcttcgacgtgttccttcaggaccgcggcggtgtcggccacgagaagttgatggaggcgcgcaaccagttcctggccaaagctgcgcagagcaagatccTc                                                                                                                                                      >  1:278261‑M1/149‑150 (MQ=255)    cttcttGACCCGGCCACGGTCGATGAAGTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGtt                                                                                                                                                       <  2:539912/147‑1 (MQ=255)    cttcttGACCCGGCCACGGTCGATGAAGTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGtt                                                                                                                                                       >  1:539912/1‑147 (MQ=255)        ttGACCCGGCCACGGTCGATGAAGTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCg                                                                                                                                               >  1:55870/1‑150 (MQ=255)             ccGGCCACGGTCGATGAAGTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCgg                                                                                                                                          <  1:755619/150‑1 (MQ=255)             ccGGCCACGGTCGATGAAGTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCgg                                                                                                                                          >  2:700040/1‑150 (MQ=255)              cGGCCACGGTCGATGAAGTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCggg                                                                                                                                         >  2:89359/1‑150 (MQ=255)                         gATGAAGTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCa                                                                                                                                                     <  2:1296748/128‑1 (MQ=255)                         gATGAAGTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCa                                                                                                                                                     >  1:1296748/1‑128 (MQ=255)                           tGAAGTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGa                                                                                                                            <  1:1193429/150‑1 (MQ=255)                               gTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGAt                                                                                                                        >  2:174298/1‑150 (MQ=255)                                tCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAg                                                                                                                                                    <  1:457254/122‑1 (MQ=255)                                tCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAg                                                                                                                                                    >  2:457254/1‑122 (MQ=255)                                     gACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGct                                                                                                                  <  1:700040/150‑1 (MQ=255)                                                         cAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGa                                                                                              >  1:132732/1‑150 (MQ=255)                                                          aaTCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGaa                                                                                             >  1:292273/1‑150 (MQ=255)                                                              gACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTg                                                                                                                    >  2:468496/1‑123 (MQ=255)                                                              gACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTg                                                                                                                    <  1:468496/123‑1 (MQ=255)                                                              gACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTgg                                                                                         <  2:974731/150‑1 (MQ=255)                                                              gACAGGGTGTTGTTGAAGCCGGGAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTgg                                                                                         <  1:72858/150‑1 (MQ=255)                                                                         gttgATGTCGTCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTc                                                                              >  2:1089298/1‑150 (MQ=255)                                                                          ttgATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACg                                                                                                                                   <  2:1420784/96‑1 (MQ=255)                                                                          ttgATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACg                                                                                                                                   >  1:1420784/1‑96 (MQ=255)                                                                             aTGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATc                                                                          <  1:922629/150‑1 (MQ=255)                                                                                tCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAg‑g                                                                                                                                                  >  1:967265/1‑75 (MQ=255)                                                                                tCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAg‑g                                                                                                                                                  <  2:967265/75‑1 (MQ=255)                                                                                  ggCAATGGTCACGCCCAGGGCGCTGCCGGACACGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACtt                                                                     >  1:37146/1‑150 (MQ=255)                                                                                   gCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCa                                                                                                 <  1:981733/121‑1 (MQ=255)                                                                                   gCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCa                                                                                                 >  2:981733/1‑121 (MQ=255)                                                                                   gCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTtc                                                                    <  2:292273/150‑1 (MQ=255)                                                                                       tGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGACGGTTCGACACTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGt                                                                <  2:37146/150‑1 (MQ=255)                                                                                                        cTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTtctc                                                                  >  1:1148271/1‑131 (MQ=255)                                                                                                        cTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTtctc                                                                  <  2:1148271/131‑1 (MQ=255)                                                                                                          ggCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCACCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTc                                             >  2:106599/1‑150 (MQ=255)                                                                                                           gCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTcc                                            <  2:428099/150‑1 (MQ=255)                                                                                                           gCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTcc                                            >  1:284359/1‑150 (MQ=255)                                                                                                            cACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCt                                           <  2:55870/150‑1 (MQ=255)                                                                                                             aCGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTTCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTg                                          >  2:221313/1‑150 (MQ=255)                                                                                                               gTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGaa                                        <  1:1089298/150‑1 (MQ=255)                                                                                                               gTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGaa                                        <  2:284359/150‑1 (MQ=255)                                                                                                                ttCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGATGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAg                                       <  1:342382/150‑1 (MQ=255)                                                                                                                     catcaATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGctc                                                                                                                 >  1:813314/1‑71 (MQ=255)                                                                                                                     catcaATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGctc                                                                                                                 <  2:813314/71‑1 (MQ=255)                                                                                                                      atcaATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAacac                                 >  2:1412671/1‑150 (MQ=255)                                                                                                                               caaagctgcgcagagcaagatccTCAGCGCCGAGGGCTTGAACGGC‑CTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGcc                        <  1:1045953‑M1/127‑1 (MQ=255)                                                                                                                                   tGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTg                    <  2:1353716/150‑1 (MQ=255)                                                                                                                                     gTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGa                                                                                                                         <  2:999736/47‑1 (MQ=255)                                                                                                                                     gTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGa                                                                                                                         >  1:999736/1‑47 (MQ=255)                                                                                                                                     gTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAAATGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGc                  >  1:270696/1‑150 (MQ=255)                                                                                                                                        gcagagcaagatccTCAGCGCCGTGCGCCCGAACGGC‑CTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGGCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCt                                           >  2:821563‑M1/15‑122 (MQ=255)                                                                                                                                        gcagagcaagatccTCAGCGCCGTGCGCCCGAACGGC‑CTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCt                                           <  1:821563‑M1/108‑1 (MQ=255)                                                                                                                                         tGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTa              <  2:132732/150‑1 (MQ=255)                                                                                                                                          gCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCACTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTAc             <  2:1112509/150‑1 (MQ=255)                                                                                                                                                    gTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGt                     <  1:960097/132‑1 (MQ=255)                                                                                                                                                    gTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGt                     >  2:960097/1‑132 (MQ=255)                                                                                                                                                     ttCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCTCGCTCCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGc  <  1:89359/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CACCTTCTTGACCCGGCCACGGTCGATGAAGTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGC  >  NC_002947/1579132‑1579429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.