New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1579281 =	41 (0.780)	3 (0.060)	3/238	NT	6.9%	coding (2158/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	1579308 =	41 (0.810)					coding (2131/3153 nt)	ttgB	efflux pump membrane protein TtgB

GTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCGGGGCGAAGGCGAACAC  >  NC_002947/1579162‑1579455                                                                                                                                                    |                                                                                                                                                    gTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGAt                                                                                                                                                  >  2:174298/1‑150 (MQ=255)       gACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGct                                                                                                                                            <  1:700040/150‑1 (MQ=255)                     ggcttcgacgtgttccttcaggaccgcggcggtgtcggccacgagaagttgatggaggcgcgcaaccagttcctggccaaagctgcgcagagcaagatcctcaggccgttcaagccctcggcgctgaGGATCTTGCTCTGCGCAGCTTTg                                                                                                                               <  1:1045953‑M2/23‑1 (MQ=255)                           cAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGa                                                                                                                        >  1:132732/1‑150 (MQ=255)                            aaTCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGaa                                                                                                                       >  1:292273/1‑150 (MQ=255)                                gACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTg                                                                                                                                              >  2:468496/1‑123 (MQ=255)                                gACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTg                                                                                                                                              <  1:468496/123‑1 (MQ=255)                                gACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTgg                                                                                                                   <  2:974731/150‑1 (MQ=255)                                gACAGGGTGTTGTTGAAGCCGGGAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTgg                                                                                                                   <  1:72858/150‑1 (MQ=255)                                        aggaccgcggcggtgtcggccacgagaagttgatggaggcgcgcaaccagttcctggccaaagctgcgcagagcaagatcctcaggccgttcgggcgcacggcgctgaGGATCTTGCTCTgc                                                                                                                                        <  1:821563‑M2/14‑1 (MQ=255)                                        aggaccgcggcggtgtcggccacgagaagttgatggagccgcgcaaccagttcctggccaaagctgcgcagagcaagatcctcaggccgttcgggcgcacggcgctgaGGATCTTGCTCTgc                                                                                                                                        >  2:821563‑M2/109‑122 (MQ=255)                                           gttgATGTCGTCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTc                                                                                                        >  2:1089298/1‑150 (MQ=255)                                               aTGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATc                                                                                                    <  1:922629/150‑1 (MQ=255)                                                    ggCAATGGTCACGCCCAGGGCGCTGCCGGACACGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACtt                                                                                               >  1:37146/1‑150 (MQ=255)                                                     gCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCa                                                                                                                           >  2:981733/1‑121 (MQ=255)                                                     gCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCa                                                                                                                           <  1:981733/121‑1 (MQ=255)                                                     gCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTtc                                                                                              <  2:292273/150‑1 (MQ=255)                                                         tGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGACGGTTCGACACTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGt                                                                                          <  2:37146/150‑1 (MQ=255)                                                                          cTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTtctc                                                                                            <  2:1148271/131‑1 (MQ=255)                                                                          cTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTtctc                                                                                            >  1:1148271/1‑131 (MQ=255)                                                                            ggCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCACCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTc                                                                       >  2:106599/1‑150 (MQ=255)                                                                             gCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTcc                                                                      <  2:428099/150‑1 (MQ=255)                                                                             gCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTcc                                                                      >  1:284359/1‑150 (MQ=255)                                                                              cACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCt                                                                     <  2:55870/150‑1 (MQ=255)                                                                               aCGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTTCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTg                                                                    >  2:221313/1‑150 (MQ=255)                                                                                 gTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGaa                                                                  <  2:284359/150‑1 (MQ=255)                                                                                 gTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGaa                                                                  <  1:1089298/150‑1 (MQ=255)                                                                                  ttCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGATGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAg                                                                 <  1:342382/150‑1 (MQ=255)                                                                                       catcaATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGctc                                                                                                                                           >  1:813314/1‑71 (MQ=255)                                                                                       catcaATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGctc                                                                                                                                           <  2:813314/71‑1 (MQ=255)                                                                                        atcaATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAacac                                                           >  2:1412671/1‑150 (MQ=255)                                                                                                 caaagctgcgcagagcaagatccTCAGCGCCGAGGGCTTGAACGGC‑CTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGcc                                                  <  1:1045953‑M1/127‑1 (MQ=255)                                                                                                     tGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTg                                              <  2:1353716/150‑1 (MQ=255)                                                                                                       gTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGa                                                                                                                                                   >  1:999736/1‑47 (MQ=255)                                                                                                       gTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGa                                                                                                                                                   <  2:999736/47‑1 (MQ=255)                                                                                                       gTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAAATGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGc                                            >  1:270696/1‑150 (MQ=255)                                                                                                          gcagagcaagatccTCAGCGCCGTGCGCCCGAACGGC‑CTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGGCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCt                                                                     >  2:821563‑M1/15‑122 (MQ=255)                                                                                                          gcagagcaagatccTCAGCGCCGTGCGCCCGAACGGC‑CTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCt                                                                     <  1:821563‑M1/108‑1 (MQ=255)                                                                                                           tGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTa                                        <  2:132732/150‑1 (MQ=255)                                                                                                            gCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCACTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTAc                                       <  2:1112509/150‑1 (MQ=255)                                                                                                                      gTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGt                                               >  2:960097/1‑132 (MQ=255)                                                                                                                      gTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGt                                               <  1:960097/132‑1 (MQ=255)                                                                                                                       ttCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCTCGCTCCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGc                            <  1:89359/150‑1 (MQ=255)                                                                                                                          AG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCAcc                         <  1:1178372‑M1/150‑1 (MQ=255)                                                                                                                             gCCGTTCGGGCGGACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACAGGTCGCCGGCCTCCATAAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGc                       >  2:49577/1‑150 (MQ=255)                                                                                                                               cGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTg                     >  2:568555/1‑150 (MQ=255)                                                                                                                               cGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTg                     <  2:268168/150‑1 (MQ=255)                                                                                                                                       cgcACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCGGggcg             >  1:35124/1‑150 (MQ=255)                                                                                                                                          aCGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACGCCGCCGCGGTCCTGAAGGGACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCGGggcgaag          <  1:174298/150‑1 (MQ=255)                                                                                                                                          aCGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCg                  >  1:167363/1‑142 (MQ=255)                                                                                                                                          aCGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCg                  <  2:167363/142‑1 (MQ=255)                                                                                                                                           cGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCACCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCGGggcgaagg         <  1:106599/150‑1 (MQ=255)                                                                                                                                                  gaGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCGGGGCGAAGGCGAacac  >  2:252681‑M2/3‑150 (MQ=255)                                                                                                                                                  gaGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCGGGGCGAAGGCGAacac  >  1:278261‑M2/3‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GTCGTTGACGTAGCTGGCACCCAAGGCAATCGACAGGGTGTTGTTGATGTCGGCAATGGTCACGCCCAGGGCGCTGGCACGTTCGTCATCAATGGTCAGCTGGTACTGCGGTTCATCGTTCAG‑GCCGTTCGGGCGCACGGCGCTGAGGATCTTGCTCTGCGCAGCTTTGGCCAGGAACTGGTTGCGCGCCTCCATCAACTTCTCGTGGCCGACACCGCCGCGGTCCTGAAGGAACACGTCGAAGCCGGTGGCGTTACCCAGTTCAAGCACCGCTGGCGGGGCGAAGGCGAACAC  >  NC_002947/1579162‑1579455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.