New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1636094	43 (0.820)	4 (0.080)	4/228	NT	8.8%	coding (229/684 nt)	recO	DNA repair protein RecO
	?	NC_002947	= 1636104	43 (0.880)					coding (239/684 nt)	recO	DNA repair protein RecO

TTTTTCACCCCGCAGGGCCGCATGCGTGCCGTGTTGCGTCGCGCGCGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1635941‑1636094 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatcgccgTGAAGCCAGGCGGCGATGCCGGTGCTGTCCATGCGGCTGACATTCTTCAGCTCGCCACGCCCACGCAGCTCCACCTCCAGCGACACGAACGGCCGCACCAGGCTGCCGCCCTTACTGCGCGCGCGACGCAACACGGCACGCATGCGGC  <  NC_002947/1636104‑1635957                                                                                                                                                                                                                                                                                                                TTTTTCACCCCGCAGGGCCGCATGCGTGCCGTGTTGCGTCGCGCGCGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGAACCGGCATC                                                                                                                                                          >  1:645124/1‑150                                                                                           GTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGTGAAGCCAGGCGGCGAT                                                                                                                                     <  1:994741/81‑1                                                                                           GTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGTGAAGCCAGGCGGCGAT                                                                                                                                     >  2:994741/1‑81                                                                                                                     GAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGTGAAGCCAGGCGGCGATGCCG                                                                                                                                 <  1:705100/59‑1                                                                                                                     GAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGTGAAGCCAGGCGGCGATGCCG                                                                                                                                 >  2:705100/1‑59                                                                                                                                                    ATCGCCGTGAAGCCAGGCGGCGATGCCGGTGCTGTCCATGCGGCTGACATTCTTCAGCTCGCCACGCCCACGCAGCTCCACCTCCAGCGACACGAACGGCCGCACCAGGCTGCCGCCCTTACTGCGCGCGCGACGCAACACGGCACGCAT       >  1:920668/1‑150                                                                                                                                                      CGCCGTGAAGCCAGGCGGCGATGCCGGTGCTGTCCATGCGGCTGACATTCTTCAGCTCGCCACGCCCACGCAGCTCCACCTCCAGCGACACGAACGGCCGCACCAGGCTGCCGCCCTTACTGCGCGCGCGACGCAACACGGCACGCATGC     <  2:1219501/150‑1                                                                                                                                                         CGTGAAGCCAGGCGGCGATGCCGGTGCTGTCCATGCGGCTGACATTCTTCAGCTCGCCACGCCCACGCAGCTCCACCTCCAGCGACACGAACGGCCGCACCAGGCTGCCGCCCTTACTGCGCGCGCGACGCAACACGGCACGCATGCGGC  >  1:698713/1‑150                                                                                                                                                                                                                                                                                                                TTTTTCACCCCGCAGGGCCGCATGCGTGCCGTGTTGCGTCGCGCGCGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1635941‑1636094 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatcgccgTGAAGCCAGGCGGCGATGCCGGTGCTGTCCATGCGGCTGACATTCTTCAGCTCGCCACGCCCACGCAGCTCCACCTCCAGCGACACGAACGGCCGCACCAGGCTGCCGCCCTTACTGCGCGCGCGACGCAACACGGCACGCATGCGGC  <  NC_002947/1636104‑1635957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.