New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1636094	43 (0.820)	4 (0.080)	4/228	NT	8.8%	coding (229/684 nt)	recO	DNA repair protein RecO
	?	NC_002947	= 1636104	43 (0.880)					coding (239/684 nt)	recO	DNA repair protein RecO

GCCGCATGCGTGCCGTGTTGCGTCGCGCG‑CGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGAAGGCCGCCCGCTGGAACCTCTGCTGC  >  NC_002947/1635957‑1636250                                                                                                                                                     |                                                                                                                                                   gCCGCATGCGTGCCGTGTTGCGTCGCGCG‑CGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCAcg                                                                                                                                                  >  1:698713‑M2/1‑148 (MQ=255)    gCATGCGTGCCGTGTTGCGTCGCGCG‑CGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCAcggcg                                                                                                                                               <  2:1219501‑M2/150‑6 (MQ=255)      aTGCGTGCCGTGTTGCGTCGCGCG‑CGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCAcggcgat                                                                                                                                             >  1:920668‑M2/1‑143 (MQ=255)           tGCCGTGTTGCGTCGCGCG‑CGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCt                                                                                                                                        <  1:681248/150‑1 (MQ=255)              cGTGTTGCGTCGCGCG‑CGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGtt                                                                                                                                     >  2:1135235/1‑150 (MQ=255)                tgtTGCGTCGCGCG‑CGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCa                                                                                                                                   >  2:484830/1‑150 (MQ=255)                    tgcgcgcgcgacGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGt                                                                                                                                      <  1:394891/140‑1 (MQ=255)                    tgcgcgcgcgacGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGt                                                                                                                                      >  2:394891/5‑144 (MQ=255)                           gcg‑cgcAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTAc                                                                                                                        <  2:419260/150‑1 (MQ=255)                                  aGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAAt                                                                                                                  <  1:242941/150‑1 (MQ=255)                                    tAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGa                                                                                                                >  2:35235/1‑150 (MQ=255)                                          cggcAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCt                                                                                                          >  2:722919/1‑150 (MQ=255)                                          cggcAGCCTGGTGAGGCGGTTCGTGTCGCGGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGACAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCt                                                                                                          <  1:1380578/150‑1 (MQ=255)                                           ggcAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCGGAAGAATGTCAGCCACATGGACAGCACCCGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTg                                                                                                         >  1:525091/1‑150 (MQ=255)                                            gcAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGa                                                                                                        <  1:1219501/150‑1 (MQ=255)                                                 cTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGt                                                                                                   <  1:778720/150‑1 (MQ=255)                                                     tGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTctgc                                                                                               <  1:1067074/150‑1 (MQ=255)                                                                  gtCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGc                                                                                  >  2:868444/1‑150 (MQ=255)                                                                           ggTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTcc                                                                         <  1:416827/150‑1 (MQ=255)                                                                              ggAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGccc                                                                                          <  2:393541/130‑1 (MQ=255)                                                                              ggAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGccc                                                                                          >  1:393541/1‑130 (MQ=255)                                                                                     cgttggcgtggCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTc                                                               <  1:761254/150‑1 (MQ=255)                                                                                        gggcgtggCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGaa                                                            <  1:868444/150‑1 (MQ=255)                                                                                                  aGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCg                                                              <  1:104811/138‑1 (MQ=255)                                                                                                  aGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCg                                                              >  2:104811/1‑138 (MQ=255)                                                                                                    cTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGATGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCTACCATTTTCGAACACTACaccttg                                                >  2:144677/1‑150 (MQ=255)                                                                                                     tGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACaccttga                                               >  2:607637/1‑150 (MQ=255)                                                                                                              tCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAgg                                      >  2:157683/1‑150 (MQ=255)                                                                                                                aGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGcc                                    >  1:639451/1‑150 (MQ=255)                                                                                                                   cGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGGGGGTTGTACCTGAATGAGTTGATGCTGCGTCTGCTGCACGAGAAATCACCCTTTTGTTCCATTTTCCAACACTACACCTTGACCTTGCAGGCCCTg                                 <  1:27074/150‑1 (MQ=255)                                                                                                                    gCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTgg                                <  1:722919/150‑1 (MQ=255)                                                                                                                     cATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGc                               >  2:1208615/1‑150 (MQ=255)                                                                                                                     cATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGAACATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGc                               >  1:656558/1‑150 (MQ=255)                                                                                                                      aTGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCt                              >  1:1262765/1‑150 (MQ=255)                                                                                                                       tGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTg                             >  1:533664/1‑150 (MQ=255)                                                                                                                       tGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATGTTCGAACACTACACCTTGACCTTGTAGGACCTGGCTg                             >  2:324216/1‑150 (MQ=255)                                                                                                                         gACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGaa                           <  2:533664/150‑1 (MQ=255)                                                                                                                         gACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGaa                           <  2:639451/150‑1 (MQ=255)                                                                                                                          aCAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGAAg                          <  1:35235/150‑1 (MQ=255)                                                                                                                          aCAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGAAg                          <  1:1135235/150‑1 (MQ=255)                                                                                                                          aCAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGAAg                          >  1:265146/1‑150 (MQ=255)                                                                                                                              cACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGAAGgccg                      >  2:1347239/1‑150 (MQ=255)                                                                                                                              cACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCAACGTTTCCGACCATTTTCGAACACTACACCTGGACCTTGCAGGCCCTGGCTGAAGgccg                      >  2:232433/1‑150 (MQ=255)                                                                                                                              cACCGGCATCGCCGCCTGGCATCACGGCAATGCGCAGCACAGCGGGTTGTACCCGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGATGCACCGTTTCCGACCATTTTCGAACACTACACCTTGCCCGTGCAGGCCCTGCCTGCAGgccg                      >  2:427989/1‑150 (MQ=255)                                                                                                                                 cGGCATCGCCGCCTGGCTTCAcggcgatgccggtgctgtccatgcggctgacattcttc                                                                                                              <  1:705100‑M2/59‑39 (MQ=255)                                                                                                                                 cGGCATCGCCGCCTGGCTTCAcggcgatgccggtgctgtccatgcggctgacattcttc                                                                                                              >  2:705100‑M2/1‑21 (MQ=255)                                                                                                                                 cGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTCCACCTTGACCTTGCAGGCCCTGGCTGAAGGccgccc                   >  1:7657/1‑150 (MQ=255)                                                                                                                                     aTCGCCGCCTGGCTTCAcggcgatgccggtgctgtccatgcggctgacattcttcagctcgccacgcccacgcagctccac                                                                                    <  1:994741‑M2/81‑65 (MQ=255)                                                                                                                                     aTCGCCGCCTGGCTTCAcggcgatgccggtgctgtccatgcggctgacattcttcagctcgccacgcccacgcagctccac                                                                                    >  2:994741‑M2/1‑17 (MQ=255)                                                                                                                                     aTCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGAAGGCCGCCCGCTg               <  1:607637/150‑1 (MQ=255)                                                                                                                                           gccTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGAAg                          >  1:22554/1‑133 (MQ=255)                                                                                                                                           gccTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGAAg                          <  2:22554/133‑1 (MQ=255)                                                                                                                                              tGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGCAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGAAGGCCGCCCGCTGGAACCTctg      <  1:317343/150‑1 (MQ=255)                                                                                                                                                  ttCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTgg                                >  1:991764/1‑120 (MQ=255)                                                                                                                                                  ttCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTgg                                <  2:991764/120‑1 (MQ=255)                                                                                                                                                  ttCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGAAGGCCGCCCGCTGGAACCTCtgctgc  >  2:508070/1‑150 (MQ=255)                                                                                                                                                  ttCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGAAGGCCGCCCGCTGGAACCTCtgctgc  >  1:120567/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GCCGCATGCGTGCCGTGTTGCGTCGCGCG‑CGCAGTAAGGGCGGCAGCCTGGTGCGGCCGTTCGTGTCGCTGGAGGTGGAGCTGCGTGGGCGTGGCGAGCTGAAGAATGTCAGCCGCATGGACAGCACCGGCATCGCCGCCTGGCTTCACGGCGATGCGCTGTTCAGCGGGTTGTACCTGAATGAGTTGCTGATGCGTCTGCTGCCCGCCGAAGCACCGTTTCCGACCATTTTCGAACACTACACCTTGACCTTGCAGGCCCTGGCTGAAGGCCGCCCGCTGGAACCTCTGCTGC  >  NC_002947/1635957‑1636250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.