| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1717406 | 51 (0.970) | 7 (0.140) | 7/234 | NT | 11.2% | coding (63/777 nt) | rsmJ | ribosomal RNA small subunit methyltransferase J |
| ? | NC_002947 | = 1717427 | 63 (1.260) | coding (84/777 nt) | rsmJ | ribosomal RNA small subunit methyltransferase J | |||||
CTGTGCTCTGGCAGAATAGCGGGATATTGCCTGTATCGGCCGTGGCTGCCGATTCATTAAGGGCTTGGTTTGATTTTTCGGGTGTGAACGATGGAAGAGCAAGGCACGGGTATCAGGGTCGAGGCGATGACAGCTGAGTATGCGCAACAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1717254‑1717406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccCAGGCGTTCAGC‑CCACGCCCTGGCCTGTTGCGCATACTCAGCTGTCATCGCCTCGACCCTGATACCCGTGCCTTGCTCTTCCATCGTTCACACCCGAAAAATCAAACCAAGCCCTTAATGAATCGGCAGCCACGGCCGATACAGGCAAT < NC_002947/1717427‑1717279 CTGTGCTCTGGCAGAATAGCGGGATATTGCCTGTATCGGCCGTGGCTGCCGATTCATTAAGGGCTTGGTTTGATTTTTCGGGTGTGAACGATGGAAGAGCAAGGCACGGGTATCAGGGTCGAGGCGATGACAGCTGAGTATGCGCAACAG < 1:305020/150‑1 TCTGGCAGAATAGCGGGATATTGCCTGTATCGGCAGTGGCTGCCGATTCATTAAGGGCTTGGTTTGATTTTTCGGGTGTGAACAATGGAAGAACACGGCACAGGTCTCAGGGTCTTGTCGATGGCAGCTGAGTATGAGAAACAGGCgagg > 2:234194/1‑146 TTGCCTGTATCGGCCGTGGCTGCCGATTCATTAAGGGCTTGGTTTGATTTTTCGGGTGTGAACGATGGAAGAGCAAGGCACGGGTATCAGGGTCGAGGCGATGACAGCTGAGTATGCGCAACAGGCCCAGGCGTTCAGC‑CCACGCCCTGG > 1:1099981/1‑150 CCTGTATCGGCCGTGGCTGCCGATTCATTAAGGGCTTGGTTTGATTTTTCGGGTGTGAACGATGGAAGAGCAAGGCACGGGTATCAGGGTCGAGGCGATGACAGCTGAGTATGCGCAACAGGCCCAGGCGTTCAGC‑CCACGCCCTGGCCT < 2:1099981/150‑1 GCGATGACAGCTGAGTATGCGCAACAGGCCAGGGCG‑TGGGCTGAACGCCTGGGCCTGTTGCGCATACTCAGCTGTCATCGCCTCGACCCTGATACCCGTGCCTTGCTCTTCCATCGTTCACACCCGAAAAATCAAACCAAGCCCTTAATG > 1:876517/1‑150 GACAGCTGAGTATGCGCAACAGGCCAGGGCG‑TGGGCTGAACGCCTGGGCCTGTTGCGCATACTCAGCTGTCATCGCCTCGACCCTGATACCCGTGCCTTGCTCTTCCATCGTTCACACCCGAAAAATCAAACCAAGCCCTTAATGAATCG < 2:876517/150‑1 AGCTGAGTATGCGCAACAGGCCAGGGCG‑TGGGCTGAACGCCTGGGCCTGTTGCGCATACTCAGCTGTCATCGCCTCGACCCTGATACCCGTGCCTTGCTCTTCCATCGTTCACACCCGAAAAATCAAACCAAGCCCTTAATGAATCGGCA > 2:751191/1‑150 CTGAGTATGCGCAACAGGCCCAGGCGTTCAGC‑CCACGCCCTGGCCTGTTGCGCATACTCAGCTGTCATCGCCTCGACCCTGATACCCGTGCCTTGCTCTTCCATCGTTCA < 1:1007805/110‑1 CTGAGTATGCGCAACAGGCCCAGGCGTTCAGC‑CCACGCCCTGGCCTGTTGCGCATACTCAGCTGTCATCGCCTCGACCCTGATACCCGTGCCTTGCTCTTCCATCGTTCA > 2:1007805/1‑110 CAGGCCCAGGCGTTCAGC‑CCACGCCCTGGCCTGTTGCGCATACTCAGCTGTCATCGCCTCGACCCTGATACCCGTGCCTTGCTCTTCCATCGTTCACACCCGAAAAATCAAACCAAGCCCTTAATGAATCGGCAGCCACGGCCGATACAG < 1:127632/150‑1 CAGGCCCAGGCGTTCAGC‑CCACGCCCTGGCCTGTTGCGCATACTCAGCTGTCATCGCCTCGACCCTGATACCCGTGCCTTGCTCTTCCATCGTTCACACCCGAAAAATCAAACCAAGCCCTTAATGAATCGGCAGCCACGGCCGATACAG < 1:576879/150‑1 AGGCCCAGGCGTTCAGC‑CCACGCCCTGGCCTGTTGCGCATACTCAGCTGTCATCGCCTCGACCCTGATACCCGTGCCTTGCTCTTCCATCGTTCACACCCGAAAAATCAAACCAAGCCCTTAATGAATCGGCAGCCACGGCCGATACAGG < 2:1279672/150‑1 CCAGGCGTTCAGC‑CCACGCCCTGGCCTGTTGCGCATACTCAGCTGTCATCGCCTCGACCCTGATACCCGTGCCTTGCTCTTCCATCGTTCACACCCGAAAAATCAAACCAAGCCCTTAATGAATCGGCAGCCACGGCCGATACAGGCAAT > 1:872552/1‑150 CTGTGCTCTGGCAGAATAGCGGGATATTGCCTGTATCGGCCGTGGCTGCCGATTCATTAAGGGCTTGGTTTGATTTTTCGGGTGTGAACGATGGAAGAGCAAGGCACGGGTATCAGGGTCGAGGCGATGACAGCTGAGTATGCGCAACAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1717254‑1717406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccCAGGCGTTCAGC‑CCACGCCCTGGCCTGTTGCGCATACTCAGCTGTCATCGCCTCGACCCTGATACCCGTGCCTTGCTCTTCCATCGTTCACACCCGAAAAATCAAACCAAGCCCTTAATGAATCGGCAGCCACGGCCGATACAGGCAAT < NC_002947/1717427‑1717279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |