| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2021755 = | 41 (0.780) | 4 (0.080) | 4/232 | NT | 9.6% | intergenic (+249/‑190) | PP_1798/gmd | outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase |
| ? | NC_002947 | 2021785 = | 37 (0.750) | intergenic (+279/‑160) | PP_1798/gmd | outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase | |||||
ACCCCCGTGCGCAAAGCAAGTGGGGCACGCGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2021789‑2021755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcacgGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTCGTCTAACCTTCATACGCGTGGTTGGAATTGCCCGCGTCAGGC > NC_002947/2021785‑2021931 ACCCCCGTGCGCAAAGCAAGTGGGGCACGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTC < 1:353108/140‑1ACCCCCGTGCGCAAAGCAAGTGGGGCACGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTC > 2:353108/1‑140 CCCCGTGCGCAAAGCAAGTGGGGCACGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGG > 1:926465/1‑82 CCCCGTGCGCAAAGCAAGTGGGGCACGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGG < 2:926465/82‑1 GCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTCGTCTAACCTTCATACGCGTGGTTGGAATTGCCCGCGTCAG > 2:809010/1‑150 ACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCAAACATCTGTTTGCGAGCCGACGACTCTGCTCGACCGATGTATACTTCCTCGTCTAACCTTCATACGCGTGGTTGGAATTGCCCGCGTCAGGC > 1:1241182/1‑150 ACCCCCGTGCGCAAAGCAAGTGGGGCACGCGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2021789‑2021755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcacgGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTCGTCTAACCTTCATACGCGTGGTTGGAATTGCCCGCGTCAGGC > NC_002947/2021785‑2021931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |