New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2021755 =	41 (0.780)	4 (0.080)	4/232	NT	9.6%	intergenic (+249/‑190)	PP_1798/gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
	?	NC_002947	2021785 =	37 (0.750)					intergenic (+279/‑160)	PP_1798/gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase

CTTCATCGACCTTAGCGCAGGCCGACCCGGGCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTCGTCTAACCTTCATACGCGTGGTTGGAATTGCCCGCGTCAGGC  >  NC_002947/2021636‑2021931                                                                                                                                                      |                                                                                                                                                   cTTCATCGACCTTAGCGCAGGCCGACCCGGGCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACgg                                                                                                                                                    <  1:493812/150‑1 (MQ=255)     aTCGACCTTAGCGCAGGCCGACCCGGGCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACgggg                                                                                                                                                  >  2:1423017/1‑148 (MQ=255)     aTCGACCTTAGCGCAGGCCGACCCGGGCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACgcgg                                                                                                                                                  <  1:1423017/148‑1 (MQ=255)        gACCTTAGCGCAGGCCGACCCGGGCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGcc                                                                                                                                             <  1:592669/150‑1 (MQ=255)         aCCTTAGCGCAGGCCGACCCGGGCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCa                                                                                                                                            >  2:189165/1‑150 (MQ=255)           gttAGCGTAGGCTTACCCGGGCTGTTGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAg                                                                                                                                          <  1:1003301/149‑1 (MQ=255)           cTTAGCGCAGGCCGACCCGGGCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAg                                                                                                                                          <  1:647332/150‑1 (MQ=255)               gaggaagtatacataggtcgggcggagtactcgactcgcaaacagatgttggctaccccggcgcaagttcggccaccggccgatattgcataaccttggcaccccCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGt                                                                                                                                                >  2:353108‑M1/106‑140 (MQ=255)               gaggaagtatacataggtcgggcggagtactcgactcgcaaacagatgttggctaccccggcgcaagttcggccaccggccgatattgcataaccttggcaccccCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGt                                                                                                                                                <  1:353108‑M1/35‑1 (MQ=255)                cgcAGGCCGACCCGGGCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTCCCACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTAt                                                                                                                                     <  1:1167291/150‑1 (MQ=255)                 gcAGGCCGACCCGGGCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTTCCAAGGTTATg                                                                                                                                    >  1:442523/1‑150 (MQ=255)                  cAGGCCGACCCGGGCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGc                                                                                                                                   <  1:995233/150‑1 (MQ=255)                        gACCCGGGCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATc                                                                                                                             <  1:152983/150‑1 (MQ=255)                               gCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATACCGGCCGGt                                                                                                                      <  2:167488/150‑1 (MQ=255)                                       tgctATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAAc                                                                                                              <  1:490580/150‑1 (MQ=255)                                                gCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCgg                                                                                                     >  2:909123/1‑150 (MQ=255)                                                    tttCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTa                                                                                                 >  1:85774/1‑150 (MQ=255)                                                        aGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCa                                                                                             >  2:446006/1‑150 (MQ=255)                                                              ttCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCt                                                                                       >  1:675742/1‑150 (MQ=255)                                                              ttCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGAAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCt                                                                                       >  1:441467/1‑150 (MQ=255)                                                              ttCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTGATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCt                                                                                       >  1:675059/1‑150 (MQ=255)                                                                ccTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCaa                                                                                                                                           >  1:1326934/1‑96 (MQ=255)                                                                ccTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCaa                                                                                                                                           <  2:1326934/96‑1 (MQ=255)                                                                  tACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGttt                                                                                   >  1:1167719/1‑150 (MQ=255)                                                                  tACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGttt                                                                                   <  1:446006/150‑1 (MQ=255)                                                                       cccggcgcaagttcggccaccggccgatattgcataaccttggcaccccCGTGCGCGTGCCCCACTTGCTTTGCGCACgggg                                                                                                                                                  <  2:926465‑M1/33‑1 (MQ=255)                                                                       cccggcgcaagttcggccaccggccgatattgcataaccttggcaccccCGTGCGCGTGCCCCACTTGCTTTGCGCACgggg                                                                                                                                                  >  1:926465‑M1/50‑82 (MQ=255)                                                                           cGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGcgagtcga                                                                          <  1:909123/150‑1 (MQ=255)                                                                           cGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGcgagtcga                                                                          <  1:189165/150‑1 (MQ=255)                                                                                    aCAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTACGc                                                                 >  1:221411/1‑150 (MQ=255)                                                                                        cccTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGa                                                             >  2:1334543/1‑150 (MQ=255)                                                                                           ttCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGaa                                                                                                               <  2:455274/97‑1 (MQ=255)                                                                                           ttCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGaa                                                                                                               >  1:455274/1‑97 (MQ=255)                                                                                             cGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTAt                                                        <  1:1334543/150‑1 (MQ=255)                                                                                               aCGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGt                                                      <  2:462795/150‑1 (MQ=255)                                                                                               aCGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGt                                                      <  1:150397/150‑1 (MQ=255)                                                                                                         tCCTCATGTGCCTTTCTTGCTCTTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCACCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTc                                            <  2:441467/150‑1 (MQ=255)                                                                                                          ccTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTCg                                           <  2:1167719/150‑1 (MQ=255)                                                                                                             gATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCaa                                                                                                                                 <  1:1005038/61‑1 (MQ=255)                                                                                                             gATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCaa                                                                                                                                 >  2:1005038/1‑61 (MQ=255)                                                                                                                   acccccgtgcgcaaagcaagtggggcacgcgcacgGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTc                                            >  2:353108‑M2/36‑140 (MQ=255)                                                                                                                   acccccgtgcgcaaagcaagtggggcacgcgcacgGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTc                                            <  1:353108‑M2/105‑1 (MQ=255)                                                                                                                     tttCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTCGTCTAACCTTCa                                >  2:448375/1‑150 (MQ=255)                                                                                                                     ccccgtgcgcaaagcaagtggggcacgcgcacgGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCggg                                                                                                    >  1:926465‑M2/34‑82 (MQ=255)                                                                                                                     ccccgtgcgcaaagcaagtggggcacgcgcacgGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCggg                                                                                                    <  2:926465‑M2/49‑1 (MQ=255)                                                                                                                                cgCCCAACTAGCCTTCCACAGGCGGGTGCCAAGTTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCAAATATCTGTTTGCGACTCGAGTACTCCGCCCGACCTATGTATACTTCCTCGTCTACCCTTCATACGCGTGGtt                     <  2:442523/149‑1 (MQ=255)                                                                                                                                      aCTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATAc                                                  <  1:709748/115‑1 (MQ=255)                                                                                                                                      aCTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATAc                                                  >  2:709748/1‑115 (MQ=255)                                                                                                                                                 gcacgGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTCGTCTAACCTTCATACGCGTGGTTGGAATTGCCCGCGTCAg    >  2:809010‑M2/6‑150 (MQ=255)                                                                                                                                                   acgGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCAAACATCTGTTTGCGAGCCGACGACTCTGCTCGACCGATGTATACTTCCTCGTCTAACCTTCATACGCGTGGTTGGAATTGCCCGCGTCAGGc  >  1:1241182‑M2/4‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CTTCATCGACCTTAGCGCAGGCCGACCCGGGCGGTGGCTGCTATGGGGCTATTTCAGATGCTTCCTACAAGTGCCGTGCTGGAACAGCCCTTCGACGGCACGTATCCTGATGCGCCTTTCGTGCGCGTGCCCCACTTGCTTTGCGCACGGGGGTGCCAAGGTTATGCAATATCGGCCGGTGGCCGAACTTGCGCCGGGGTAGCCAACATCTGTTTGCGAGTCGAGTACTCCGCCCGACCTATGTATACTTCCTCGTCTAACCTTCATACGCGTGGTTGGAATTGCCCGCGTCAGGC  >  NC_002947/2021636‑2021931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.