| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2056006 = | 72 (1.370) | 3 (0.070) | 3/214 | NT | 5.2% | intergenic (+12/‑131) | aroC/PP_1831 | chorismate synthase/membrane protein |
| ? | NC_002947 | 2056112 = | 47 (1.030) | intergenic (+118/‑25) | aroC/PP_1831 | chorismate synthase/membrane protein | |||||
AGCTGGACAGGCGCCAGTAGGGGATGGGTTGCATGGGGTGGCCTTGTGGGGACCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2056170‑2056006‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagaggccgGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTACTTCGACCACCTGGGCTTTTCCCCGGCGCGCA > NC_002947/2056112‑2056257 AGCTGGACAGGCGCCAGTAGGGGATGGGTTGCATGGGGTGGCCTTGTGGGGACCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACGCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTA > 1:1155181/1‑150AGCTGGACAGGCGCCAGTAGGGGATGGGTTGCATGGGGTGGCCTTGTGGGGACCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTA < 1:1394833/150‑1 GCTGGACAGGCGCCAGTAGGGGATGGGTTGCATGGGGTGGCCTTGTGGGGACCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTAC > 1:947878/1‑150 GCTGGACAGGCGCCAGTAGGGGATGGGTTGCATGGGGTGGCCTTGTGGGGACCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTAC < 2:1287038/150‑1 GCGCCAGTAGGGGATGGGTTGCATGGGGTGGCCTTGTGGGGACCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGA < 2:852093/150‑1 CCAGTAGGGGATGGGTTGCATGGGGTGGCCTTGTGGGGACCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGC > 1:10427/1‑150 CCAGTAGGGGATGGGTTGCATGGGGTGGCCTTGTGGGGACCTGGGCCGGCCTCTTCGCGGGTGAACCCGCGCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCCGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAagg > 2:181946/1‑147 CCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAAC < 1:537638/119‑1 CCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAAC > 2:537638/1‑119 CCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGTCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTAC > 2:297738/1‑150 CCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTACTTCGACCACCTGGGCTTTTC < 2:624158/150‑1 CCGCGAAGAGGCCTGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTC < 2:702535/68‑1 CCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTCATTCGACCACCTGGGCTTTTCC > 1:783840/1‑150 CCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATT > 2:1285594/1‑88 CCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATT < 1:1285594/88‑1 CCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTC > 1:702535/1‑68 GAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTACTTCGACCACCTGGGCTTTTCCCCGGCGC > 1:424358/1‑150 GAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTACTTCGACCACCTGGGCTTTTCCCCGGCGC < 1:471770/150‑1 GCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTACTTCGACCACCTGGGCTTTTCCCCGGCGCGCc > 2:231913/1‑149 GCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTACTTCGACCACCTGGGCTTTTCCCCGGCGCGCA > 1:464790/1‑150 AGCTGGACAGGCGCCAGTAGGGGATGGGTTGCATGGGGTGGCCTTGTGGGGACCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2056170‑2056006‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagaggccgGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTACTTCGACCACCTGGGCTTTTCCCCGGCGCGCA > NC_002947/2056112‑2056257 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |