New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2130430 =	42 (0.800)	4 (0.080)	4/230	NT	9.4%	coding (1812/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2130464 =	38 (0.770)					coding (1778/2496 nt)	fimD	type I pili subunit FimD

CGACCGTTACGGCAATGATCGTCAGTTTGGCCTGAGCGTGACGGTACCCTTGCATTTCGGTCACCGCGCCAATGCGACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2130586‑2130430 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgagcGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGG  >  NC_002947/2130464‑2130610                                                                                                                                                                                                                                                                                                                  CGACCGTTACGGCAATGATCGTCAGTTTGGCCTGAGCGTGACGGTACCCTTGCATTTCGGTCACCGCGCCAATGCGACCTTCGACCTGCAGCACAACGCCAACGGCTACGGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGC                                                                                                                                                            <  1:1358840/150‑1   ACCGTTACGGCAATGATCGTCAGTTTGGCCTGACCGTGACGGTACACTTGGCCTGGGATCACCGCGCCAATGCTGCCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGC                                                                                                                                                          >  1:26978/1‑150      GTTACGGCAATGATCGTCAGTTTGGCCTGAGCGTGACGGTACCCTTGCATTTCGGTCACCGCGCCAATGCGACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGA                                                                                                                                                       <  1:987259/150‑1              AATGATCGTCAGTTTGGCCTGAGCGTGACGGTACCCTTGCATTTCGGTCACCGCGCCAATGCGACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGC                                                                                                                                                     >  1:21972/1‑144              AATGATCGTCAGTTTGGCCTGAGCGTGACGGTACCCTTGCATTTCGGTCACCGCGCCAATGCGACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGC                                                                                                                                                     <  2:21972/144‑1                                                                            GACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCT                                                                                                                                                         >  1:945117/1‑78                                                                            GACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCT                                                                                                                                                         <  2:945117/78‑1                                                                                                                       GCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTG                                                                                               <  1:1060718/93‑1                                                                                                                       GCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTG                                                                                               >  2:1060718/1‑93                                                                                                                            GCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGA                                                                                      <  1:959736/97‑1                                                                                                                            GCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGA                                                                                      >  2:959736/1‑97                                                                                                                                                          GAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAG   <  2:987259/150‑1                                                                                                                                                           AGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGG  <  1:66667/150‑1                                                                                                                                                           AGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGG  >  2:1340347/1‑150                                                                                                                                                                                                                                                                                                                  CGACCGTTACGGCAATGATCGTCAGTTTGGCCTGAGCGTGACGGTACCCTTGCATTTCGGTCACCGCGCCAATGCGACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2130586‑2130430 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgagcGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGG  >  NC_002947/2130464‑2130610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.