New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2130430 =	42 (0.800)	4 (0.080)	4/230	NT	9.4%	coding (1812/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2130464 =	38 (0.770)					coding (1778/2496 nt)	fimD	type I pili subunit FimD

CACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCG  >  NC_002947/2130283‑2130577                                                                                                                                                    |                                                                                                                                                     cctgttcgcctcacaatcgttgaccgaccgttacggcaatgatcgtcagtttggcctgagcgtgacggtacccttgcatttcggtcaccgcgccaatgcgaccttcgacctgcagcacaacgccaacggctacagccagcgtgccacGCt                                                                                                                                                    <  1:66667‑M1/3‑1 (MQ=255) cctgttcgcctcacaatcgttgaccgaccgttacggcaatgatcgtcagtttggcctgagcgtgacggtacccttgcatttcggtcaccgcgccaatgcgaccttcgacctgcagcacaacgccaacggctacagccagcgtgccacGCt                                                                                                                                                    >  2:1340347‑M1/148‑150 (MQ=255)  ctgttcgcctcacaatcgttgaccgaccgttacggcaatgatcgtcagtttggcctgagcgtgacggtacccttgcatttcggtcaccgcgccaatgcgaccttcgacctgcagcacaacgccaacggctacagccagcgtgccacGCTc                                                                                                                                                   <  2:987259‑M1/4‑1 (MQ=255)  accgcaccACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTc                                                                                                                                                   >  1:103772/1‑150 (MQ=255)   ccgcacgACGGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCa                                                                                                                                                  <  2:1223239/150‑1 (MQ=255)         cacTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAgcgcgc                                                                                                                                            >  2:99467/1‑150 (MQ=255)          acTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAgcgcgcg                                                                                                                                           >  1:735613/1‑150 (MQ=255)            tGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAgcgcgcgcg                                                                                                                                         >  2:26978/1‑150 (MQ=255)             ggCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAgcgcgcgcgc                                                                                                                                        <  2:366299/150‑1 (MQ=255)               cATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGCTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAgcgcgcgcgcgc                                                                                                                                      <  2:761134/150‑1 (MQ=255)                aTTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCt                                                                                                                                     >  2:694269/1‑150 (MQ=255)                    aaTGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCg                                                                                                                                 <  1:1149980/150‑1 (MQ=255)                            gCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCt                                                                                                                         >  1:579556/1‑150 (MQ=255)                                    aGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTgg                                                                                                                 <  1:99467/150‑1 (MQ=255)                                        gTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACg                                                                                                             >  1:137810/1‑150 (MQ=255)                                        gTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACg                                                                                                             >  2:738097/1‑150 (MQ=255)                                                  gTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAg                                                                                                   >  2:496434/1‑150 (MQ=255)                                                  gTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAg                                                                                                   <  1:694269/150‑1 (MQ=255)                                                          aGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGc                                                                                           >  2:768711/1‑150 (MQ=255)                                                           gCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCg                                                                                          <  2:717997/150‑1 (MQ=255)                                                                        cATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCt                                                                                                                                     >  2:1238836/1‑94 (MQ=255)                                                                        cATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCt                                                                                                                                     <  1:1238836/94‑1 (MQ=255)                                                                           aGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGa                                                                          >  2:404492/1‑150 (MQ=255)                                                                                gCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTc                                                                     <  1:189722/150‑1 (MQ=255)                                                                                 ccTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCg                                                                    >  1:244897/1‑150 (MQ=255)                                                                                     tcaccgcgccaatgcgaccttcgacctgcagcacaacgccaacggctacagccagcgtgccacGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGc                                                                                                                     <  1:959736‑M1/34‑1 (MQ=255)                                                                                     tcaccgcgccaatgcgaccttcgacctgcagcacaacgccaacggctacagccagcgtgccacGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGc                                                                                                                     >  2:959736‑M1/64‑97 (MQ=255)                                                                                        gCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGgc                                                            <  2:244897/150‑1 (MQ=255)                                                                                        gCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGCTTGTCACGGCTGAGGCTGGTGCTGTAGCTCA‑‑GCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGgcgc                                                          <  1:791637/150‑1 (MQ=255)                                                                                           gAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGcgcg                                                         <  1:768711/150‑1 (MQ=255)                                                                                           gAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGcgcg                                                         <  2:60652/150‑1 (MQ=255)                                                                                              caatgcgaccttcgacctgcagcacaacgccaacggctacagccagcgtgccacGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGc                                                                                                                >  2:1060718‑M1/55‑93 (MQ=255)                                                                                              caatgcgaccttcgacctgcagcacaacgccaacggctacagccagcgtgccacGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGc                                                                                                                <  1:1060718‑M1/39‑1 (MQ=255)                                                                                                    tGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCA‑‑GCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TCGGCGCGGTGACCGAAAt                                              <  2:726540/150‑1 (MQ=255)                                                                                                       cGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTg                                                              >  2:130225/1‑133 (MQ=255)                                                                                                       cGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTg                                                              >  2:841246/1‑133 (MQ=255)                                                                                                       cGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTg                                                              <  1:130225/133‑1 (MQ=255)                                                                                                       cGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTg                                                              <  1:841246/133‑1 (MQ=255)                                                                                                         cTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCa                                           <  2:77130/150‑1 (MQ=255)                                                                                                          tGTCTTGCGGGCGTGTTCGTCACGGCTCAGGGTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCCCAGGATTAGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCaa                                          <  1:738097/150‑1 (MQ=255)                                                                                                          tGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCC‑TTGGCGCGGTGACCGAAATGCaa                                          <  1:404492/150‑1 (MQ=255)                                                                                                            tCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAgg                                        <  1:496434/150‑1 (MQ=255)                                                                                                              ttGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCA‑‑GCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTAc                                    >  2:1220363/1‑150 (MQ=255)                                                                                                                         ttCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCt                           >  1:113312/1‑150 (MQ=255)                                                                                                                           cGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCGCGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCa                         <  2:137810/150‑1 (MQ=255)                                                                                                                             tCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAg                        >  1:229417/1‑149 (MQ=255)                                                                                                                             tCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAg                        <  2:229417/149‑1 (MQ=255)                                                                                                                                   cTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGt                                                                                               <  2:251664/73‑1 (MQ=255)                                                                                                                                   cTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGt                                                                                               >  1:251664/1‑73 (MQ=255)                                                                                                                                      aGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGa              >  2:19793/1‑150 (MQ=255)                                                                                                                                              gCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCAtt      <  1:988154/150‑1 (MQ=255)                                                                                                                                                tGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGACGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGc    >  1:391017/1‑150 (MQ=255)                                                                                                                                                  tAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGC‑GCCGCAACAAACGAGCACTAACCGGCGTGAGCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCg  >  1:1169051/1‑150 (MQ=255)                                                                                                                                                  tAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGGTGTGCGGGAGCTCAAGGGTGGCT‑GGCGCACGGTGACCGAAAGGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCg  >  1:1169216/1‑150 (MQ=255)                                                                                                                                                    GCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCAtt      >  1:21972‑M1/1‑144 (MQ=255)                                                                                                                                                    GCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCAtt      <  2:21972‑M1/144‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCG  >  NC_002947/2130283‑2130577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.