New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2130430 =	42 (0.800)	4 (0.080)	4/230	NT	9.4%	coding (1812/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2130464 =	38 (0.770)					coding (1778/2496 nt)	fimD	type I pili subunit FimD

AGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGG  >  NC_002947/2130318‑2130610                                                                                                                                                   |                                                                                                                                                    aGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTgg                                                                                                                                                  <  1:99467/150‑1 (MQ=255)     gTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACg                                                                                                                                              >  2:738097/1‑150 (MQ=255)     gTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACg                                                                                                                                              >  1:137810/1‑150 (MQ=255)               gTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAg                                                                                                                                    <  1:694269/150‑1 (MQ=255)               gTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAg                                                                                                                                    >  2:496434/1‑150 (MQ=255)                       aGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGc                                                                                                                            >  2:768711/1‑150 (MQ=255)                        gCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCg                                                                                                                           <  2:717997/150‑1 (MQ=255)                                        aGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGa                                                                                                           >  2:404492/1‑150 (MQ=255)                                             gCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTc                                                                                                      <  1:189722/150‑1 (MQ=255)                                              ccTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCg                                                                                                     >  1:244897/1‑150 (MQ=255)                                                     gCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGgc                                                                                             <  2:244897/150‑1 (MQ=255)                                                     gCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGCTTGTCACGGCTGAGGCTGGTGCTGTAGCTCA‑‑GCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGgcgc                                                                                           <  1:791637/150‑1 (MQ=255)                                                        gAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGcgcg                                                                                          <  2:60652/150‑1 (MQ=255)                                                        gAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGcgcg                                                                                          <  1:768711/150‑1 (MQ=255)                                                           caatgcgaccttcgacctgcagcacaacgccaacggctacagccagcgtgccacGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGc                                                                                                                                                 >  2:1060718‑M1/55‑93 (MQ=255)                                                           caatgcgaccttcgacctgcagcacaacgccaacggctacagccagcgtgccacGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGc                                                                                                                                                 <  1:1060718‑M1/39‑1 (MQ=255)                                                                 tGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCA‑‑GCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TCGGCGCGGTGACCGAAAt                                                                               <  2:726540/150‑1 (MQ=255)                                                                    cGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTg                                                                                               <  1:130225/133‑1 (MQ=255)                                                                    cGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTg                                                                                               >  2:841246/1‑133 (MQ=255)                                                                    cGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTg                                                                                               >  2:130225/1‑133 (MQ=255)                                                                    cGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTg                                                                                               <  1:841246/133‑1 (MQ=255)                                                                      cTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCa                                                                            <  2:77130/150‑1 (MQ=255)                                                                       tGTCTTGCGGGCGTGTTCGTCACGGCTCAGGGTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCCCAGGATTAGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCaa                                                                           <  1:738097/150‑1 (MQ=255)                                                                       tGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCC‑TTGGCGCGGTGACCGAAATGCaa                                                                           <  1:404492/150‑1 (MQ=255)                                                                         tCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAgg                                                                         <  1:496434/150‑1 (MQ=255)                                                                           ttGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCA‑‑GCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTAc                                                                     >  2:1220363/1‑150 (MQ=255)                                                                                      ttCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCt                                                            >  1:113312/1‑150 (MQ=255)                                                                                        cGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCGCGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCa                                                          <  2:137810/150‑1 (MQ=255)                                                                                          tCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAg                                                         >  1:229417/1‑149 (MQ=255)                                                                                          tCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAg                                                         <  2:229417/149‑1 (MQ=255)                                                                                                cTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGt                                                                                                                                <  2:251664/73‑1 (MQ=255)                                                                                                cTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGt                                                                                                                                >  1:251664/1‑73 (MQ=255)                                                                                                   aGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGa                                               >  2:19793/1‑150 (MQ=255)                                                                                                           gCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCAtt                                       <  1:988154/150‑1 (MQ=255)                                                                                                            gccacgctcagcggcagcgacagcgcgcgcgcgctgagcGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTg                                                                                               <  1:1060718‑M2/54‑1 (MQ=255)                                                                                                            gccacgctcagcggcagcgacagcgcgcgcgcgctgagcGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTg                                                                                               >  2:1060718‑M2/40‑93 (MQ=255)                                                                                                             tGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGACGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGc                                     >  1:391017/1‑150 (MQ=255)                                                                                                               tAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGC‑GCCGCAACAAACGAGCACTAACCGGCGTGAGCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCg                                   >  1:1169051/1‑150 (MQ=255)                                                                                                               tAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGGTGTGCGGGAGCTCAAGGGTGGCT‑GGCGCACGGTGACCGAAAGGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCg                                   >  1:1169216/1‑150 (MQ=255)                                                                                                                 gctcagcggcagcgacagcgcgcgcgcgctgagcGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGa                                                                                      >  2:959736‑M2/35‑97 (MQ=255)                                                                                                                 gctcagcggcagcgacagcgcgcgcgcgctgagcGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGa                                                                                      <  1:959736‑M2/63‑1 (MQ=255)                                                                                                                 GCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCAtt                                       <  2:21972‑M1/144‑1 (MQ=255)                                                                                                                 GCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCAtt                                       >  1:21972‑M1/1‑144 (MQ=255)                                                                                                                   TCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAAc                               <  1:987259‑M1/150‑1 (MQ=255)                                                                                                                     AGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTc                                                                                                      >  1:945117‑M1/1‑78 (MQ=255)                                                                                                                     AGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTc                                                                                                      <  2:945117‑M1/78‑1 (MQ=255)                                                                                                                      GCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGCAGCA‑TTGGCGCGGTGATCCCAGGCCAAGTGTACCGTCACGGTCAGGCCAAACTGACGATCATTGCCGTAACGGt                            >  1:26978‑M1/1‑150 (MQ=255)                                                                                                                        GCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCCGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCg                          <  1:1358840‑M1/150‑1 (MQ=255)                                                                                                                          gcgcgcgcTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAAcggtcggt                        <  2:40191/150‑1 (MQ=255)                                                                                                                                  tGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAAc                                                  <  2:1310231/116‑1 (MQ=255)                                                                                                                                  tGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAAc                                                  >  1:1310231/1‑116 (MQ=255)                                                                                                                                  tGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGAtt                <  2:579556/150‑1 (MQ=255)                                                                                                                                               gagcGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAg   <  2:987259‑M2/146‑1 (MQ=255)                                                                                                                                                agcGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAgg  <  1:66667‑M2/147‑1 (MQ=255)                                                                                                                                                agcGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAgg  >  2:1340347‑M2/4‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                    AGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCA‑TTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGG  >  NC_002947/2130318‑2130610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.