| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2982452 = | 51 (0.970) | 3 (0.060) | 3/234 | NT | 5.6% | coding (770/810 nt) | PP_2608 | shikimate dehydrogenase family protein |
| ? | NC_002947 | 2982485 = | 53 (1.060) | coding (737/810 nt) | PP_2608 | shikimate dehydrogenase family protein | |||||
TCCGCCGCCCTGCTGGCTACCCTGCAGCCAGACACCCTGGTCGCCGACGTGGTCACCTCACCCGAGATCACCCCGCTGCTGAACCGCGCGCGGCAAGTAGGTTGCAGGATCCAGACTGGCCCGGAAATGGCCTTCGCCCAACTGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2982600‑2982452‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccaGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGC > NC_002947/2982485‑2982629 TCCGCCGCCCTGCTGGCTACCCTGCAGCCAGACACCCTGGTCGCCGACGTGGTCACCTCACCCGAGATCACCCCGCTGCTGAACCGCGCGCGGCAAGTAGGTTGCAGGATCCAGACTGGCCCGGAAATGGCCTTCGCCCAACTGG < 1:335688/145‑1TCCGCCGCCCTGCTGGCTACCCTGCAGCCAGACACCCTGGTCGCCGACGTGGTCACCTCACCCGAGATCACCCCGCTGCTGAACCGCGCGCGGCAAGTAGGTTGCAGGATCCAGACTGGCCCGGAAATGGCCTTCGCCCAACTGG > 2:335688/1‑145 AGACTGGCCCGGAAATGGCCTTCGCCCAACTGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGC > 2:854213/1‑150 ACTGGCCCGGAAATGGCCTTCGCCCAACTGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGT > 1:971430/1‑82 ACTGGCCCGGAAATGGCCTTCGCCCAACTGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGT < 2:971430/82‑1 GGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGC > 1:92159/1‑137 GGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGC < 2:92159/137‑1 GGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAG < 1:936268/101‑1 GGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAG > 2:936268/1‑101 GGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGC < 1:881290/150‑1 TCCGCCGCCCTGCTGGCTACCCTGCAGCCAGACACCCTGGTCGCCGACGTGGTCACCTCACCCGAGATCACCCCGCTGCTGAACCGCGCGCGGCAAGTAGGTTGCAGGATCCAGACTGGCCCGGAAATGGCCTTCGCCCAACTGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2982600‑2982452‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccaGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGC > NC_002947/2982485‑2982629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |