New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3036491 =	45 (0.860)	5 (0.100)	3/238	NT	10.7%	intergenic (‑38/+197)	PP_2648/PP_2649	universal stress protein family protein/LysR family transcriptional regulator
	?	NC_002947	3036523 =	40 (0.790)					intergenic (‑70/+165)	PP_2648/PP_2649	universal stress protein family protein/LysR family transcriptional regulator

AGGGTCAAGACGGTAATGAGGCAGCCCGCCAGCCCTGGGTAATCAGCCTTGCAGCTACACCGGCAGTGCTGTTGGCAGGCATGACCTGCCGCTACACCTGCACGCCATTGACCCAAATCAAGCCCTCGCGCCGGGTTCGCGCGACGATGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3036642‑3036491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATGCCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCGGGCTGCCTCATTACCGTCTTGACCCTCAGCCTTTCAGCCCGGATTTCCCAGTG  >  NC_002947/3036523‑3036669                                                                                                                                                                                                                                                                                                             AGGGTCAAGACGGTAATGAGGCAGCCCGCCAGCCCTGGGTAATCAGCCTTGCAGCTACACCGGCAGTGCTGTTGGCAGGCATGACCTGCCGCTACACCTGCACGCCATTGACCCAAATCAAGCCCTCGCGCCGGGTTCGCGCGACGATGG                                                                                                                                                       <  1:480320/150‑1   GGTCAAGACGGTAATGAGGCAGCACGCCGGCCCTGGGTAATCAGCCTTGCAGCTACACCGGCAGTGCTGTTGGCAGGCATGACCTGCCGCTACACCTGCACGCCATTGACCCAAATCAAGCCCTCGCGCCGGGTTCGCGCGACGATGGCT                                                                                                                                                     >  1:1107710/1‑150       AAGACGGTAATGAGGCAGCCCGCCAGCCCTGGGTAATCAGCCTTGCAGCTACACCGGCAGTGCTGTTGGCAGGCATGACCTGCCGCTACACCTGCACGCCATTGACCCAAATCAAGCCCTCGCGCCGGGTTCGCGCGACGATGG                                                                                                                                                       <  1:331311/144‑1       AAGACGGTAATGAGGCAGCCCGCCAGCCCTGGGTAATCAGCCTTGCAGCTACACCGGCAGTGCTGTTGGCAGGCATGACCTGCCGCTACACCTGCACGCCATTGACCCAAATCAAGCCCTCGCGCCGGGTTCGCGCGACGATGG                                                                                                                                                       >  2:331311/1‑144                                             AGCCTTGCAGCTACACCGGCAGTGCTGTTGGCAGGCATGACCTGCCGCTACACCTGCACGCCATTGACCCAAATCAAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGC                                                                                                                       <  2:1424750/138‑1                                                               GCAGTGCTGTTGGCAGGCATGACCTGCCGCTACACCTGCACGCCATTGACCCAAATCAAGCCCTCGCGCCGGGTTCGCGCGACGATGGC                                                                                                                                                      >  1:151845/1‑89                                                               GCAGTGCTGTTGGCAGGCATGACCTGCCGCTACACCTGCACGCCATTGACCCAAATCAAGCCCTCGCGCCGGGTTCGCGCGACGATGGC                                                                                                                                                      <  2:151845/89‑1                                                                                           GCTACACCTGCACGCCATTGACCCAAATCAAGCCCTCGCGCCGGGTTCGCGCGACGATGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATGCCTGCCAACAACACTGCCGGTGTAGCTGCAAGCCT                                                                         <  1:1424750/138‑1                                                                                                                 CCAAATCAAGCCCTCGCGCCGGGTTCGCGCGACGATGGCTTGATTTGGGCCAATGGCGTGCAGGTGTAGCGGCAGGTCATGCCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCGGGCTGCCTCATTACCG                                       >  2:1084344/1‑150                                                                                                                              TCGCGCCGGGTTCGCGCGA‑G‑‑GGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATGCCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCGGGCTGCCTCATTACCGTCTT                                   >  1:1207173/1‑138                                                                                                                              TCGCGCCGGGTTCGCGCGA‑G‑‑GGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATGCCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCGGGCTGCCTCATTACCGTCTT                                   <  2:1207173/138‑1                                                                                                                                                     GGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATGCCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCGGGCTGCCTCATTACCGTCTTGACCCTCAGCCTTTCAGCCCGGATTTCCCAGT   <  2:1401404/150‑1                                                                                                                                                     GGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATGCCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCGGGCTGCCTCATTACCGTCTTGACCCTCA                           <  1:1161460/126‑1                                                                                                                                                     GGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATGCCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCGGGCTGCCTCATTACCGTCTTGACCCTCA                           >  2:1161460/1‑126                                                                                                                                                      GCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATGCCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCGGGCTGCCTCATTACCGTCTTGACCCTCAGCCTTTCAGCCCGGATTTCCCAGTG  <  2:328704/150‑1                                                                                                                                                      GCTTGATTTGGGTCAATCGCGTGCAGGTGTAGCGGCAGGTCATGCTTGCCAACAGCAGTGCCGGTGTAGATGCAAGGCTGATTTCCCAGGGCTGGCGGGCTGCCTCATTACCGTCTTGATCCTCAGCCTTTCAGCCCGGAGTTCCCAGTG  <  2:308969/150‑1                                                                                                                                                                                                                                                                                                             AGGGTCAAGACGGTAATGAGGCAGCCCGCCAGCCCTGGGTAATCAGCCTTGCAGCTACACCGGCAGTGCTGTTGGCAGGCATGACCTGCCGCTACACCTGCACGCCATTGACCCAAATCAAGCCCTCGCGCCGGGTTCGCGCGACGATGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3036642‑3036491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATGCCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCGGGCTGCCTCATTACCGTCTTGACCCTCAGCCTTTCAGCCCGGATTTCCCAGTG  >  NC_002947/3036523‑3036669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.