New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3036491 =	45 (0.860)	5 (0.100)	3/238	NT	10.7%	intergenic (‑38/+197)	PP_2648/PP_2649	universal stress protein family protein/LysR family transcriptional regulator
	?	NC_002947	3036523 =	40 (0.790)					intergenic (‑70/+165)	PP_2648/PP_2649	universal stress protein family protein/LysR family transcriptional regulator

TTGCGAGCATGTGGGGAAAGGTCGGTGGCAACCAGTATGTGTTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCGGGCTGCCTCATTACCGTCTTGACC  >  NC_002947/3036344‑3036640                                                                                                                                                    |                                                                                                                                                       cactgggaactccgggctgaaaggctgaggatcaagacggtaatgaggcagcccgccagccctgggaaatcagccttgcatctacaccggcactgctgttggcaagcatgacctgccgctacacctgcacgcgattgacccaaatcaAGc                                                                                                                                                      <  2:308969‑M1/3‑1 (MQ=255) cactgggaaatccgggctgaaaggctgagggtcaagacggtaatgaggcagcccgccagccctgggtaatcagccttgcagctacaccggcagtgctgttggcaggcatgacctgccgctacacctgcacgccattgacccaaatcaAGc                                                                                                                                                      <  2:328704‑M1/3‑1 (MQ=255)  actgggaaatccgggctgaaaggctgagggtcaagacggtaatgaggcagcccgccagccctgggtaatcagccttgcagctacaccggcagtgctgttggcaggcatgacctgccgctacacctgcacgccattgacccaaatcaAGcc                                                                                                                                                     <  2:1401404‑M1/4‑1 (MQ=255)    cGAGCATGTGGGGAAAGGTCGGTGGCAACCAGTATGTGTTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCAt                                                                                                                                                   >  1:269932/1‑150 (MQ=255)       gCATGTGGGGAAAGGTCGGTGGCAACCAGTATGTGTTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCAtcgt                                                                                                                                                <  2:69021/150‑1 (MQ=255)                 aaaGGTCGGTGGCAACCAGTATGTGTTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAAcc                                                                                                                                      >  1:1178020/1‑150 (MQ=255)                    ggTCGGTGGCAACCAGTATGTGTTTCAGTGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCgg                                                                                                                                   >  2:962047/1‑150 (MQ=255)                     gTCGGTGGCAACCAGTATGTGTTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAAGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGGCATTCCTTGCGTGAAGCCATCGTCGCGCGAACCCGgc                                                                                                                                  >  1:308969/1‑150 (MQ=255)                         gTGGCAACCAGTATGTGTTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGa                                                                                                                              <  2:75351/150‑1 (MQ=255)                         gTGGCAACCAGTATGTGTTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGACATCCTTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGa                                                                                                                              >  2:1403981/1‑150 (MQ=255)                          tgagggtcaagacggtaatgaggcagcccgccagccctgggtaatcagccttgcagctacaccggcagtgctgttggcaggcatgacctgccgctacacctgcacgccattgacccaaatcaAGcc                                                                                                                                                     >  2:1161460‑M1/123‑126 (MQ=255)                          tgagggtcaagacggtaatgaggcagcccgccagccctgggtaatcagccttgcagctacaccggcagtgctgttggcaggcatgacctgccgctacacctgcacgccattgacccaaatcaAGcc                                                                                                                                                     <  1:1161460‑M1/4‑1 (MQ=255)                          tGGCAACCAGTATGTGTTTCAGTGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAg                                                                                                                             <  1:962047/150‑1 (MQ=255)                             cAACCAGTATGTGTTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGAACAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGc                                                                                                                          <  2:1110017/150‑1 (MQ=255)                              aaCCAGTATGTGTTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCt                                                                                                                         >  1:949832/1‑150 (MQ=255)                                 cAGTATGTGTTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAAGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGa                                                                                                                      >  1:200413/1‑150 (MQ=255)                                  aagacggtaatgaggcagcccgccagccctgggtaatcagccttgcagctacaccggcagtgctgttggcaggcatgacctgccgctacacctgcacgccattgacccaaatcaAGCC‑‑C‑TCGCGCGAACCCGGCGCGa                                                                                                                              >  1:1207173‑M1/115‑138 (MQ=255)                                  aagacggtaatgaggcagcccgccagccctgggtaatcagccttgcagctacaccggcagtgctgttggcaggcatgacctgccgctacacctgcacgccattgacccaaatcaAGCC‑‑C‑TCGCGCGAACCCGGCGCGa                                                                                                                              <  2:1207173‑M1/24‑1 (MQ=255)                                      cggtaatgaggcagcccgccagccctgggtaatcagccttgcagctacaccggcagtgctgttggcaggcatgacctgccgctacacctgcacgccattggcccaaatcaAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTgg                                                                                                                 >  2:1084344‑M1/111‑150 (MQ=255)                                       gtgtTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCGTTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTggg                                                                                                                >  2:958812/1‑150 (MQ=255)                                        tgtTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGt                                                                                                               <  2:1178020/150‑1 (MQ=255)                                            tCAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAAt                                                                                                           <  1:195367/150‑1 (MQ=255)                                             cAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATg                                                                                                          >  1:1401404/1‑150 (MQ=255)                                                   gTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCg                                                                                                                                    >  2:412738/1‑118 (MQ=255)                                                   gTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCg                                                                                                                                    <  1:412738/118‑1 (MQ=255)                                                     tCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAg                                                                                                  <  2:949832/150‑1 (MQ=255)                                                        tgtgGGGCTCCTTGGTCAAGGCGCGCACCGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGGCGAGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGgtg                                                                                               >  1:1247884/1‑150 (MQ=255)                                                        tgtgGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGgtg                                                                                               >  2:30554/1‑150 (MQ=255)                                                                tCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCAATCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCa                                                                                       <  2:1118163/150‑1 (MQ=255)                                                                 ccTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAg                                                                                      <  1:946667/150‑1 (MQ=255)                                                                  cTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCa                                                                                                   >  2:1216811/1‑136 (MQ=255)                                                                  cTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCa                                                                                                   <  1:1216811/136‑1 (MQ=255)                                                                   ttGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGt                                                                                    >  1:860944/1‑150 (MQ=255)                                                                   ttGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGt                                                                                    >  1:133314/1‑150 (MQ=255)                                                                      gTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCAt                                                                                 <  1:30554/150‑1 (MQ=255)                                                                        aggcttgcagctacaccggcagtgttgttggcaggcatgacctgccgctacacctgcacgccattgacccaaatcaAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGc                                                                                           <  1:1424750‑M1/62‑1 (MQ=255)                                                                               cgcACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGG‑CATgacctgccgc                                                                       <  2:200413/150‑3 (MQ=255)                                                                                        aTCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGc                                                              >  1:358635/1‑150 (MQ=255)                                                                                           aaGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCgg                                                           >  2:1411682/1‑150 (MQ=255)                                                                                                 tAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTgg                                                                                                                 >  1:1224052/1‑91 (MQ=255)                                                                                                 tAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTgg                                                                                                                 <  2:1224052/91‑1 (MQ=255)                                                                                                  aaaCCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGGTGTAGCt                                                    <  2:1365139/150‑1 (MQ=255)                                                                                                    aCCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGGTGTAGCTGc                                                  <  1:1411682/150‑1 (MQ=255)                                                                                                      cTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGGTGTAGCTGCaa                                                >  2:1093174/1‑150 (MQ=255)                                                                                                       ttGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGTGAGGGCTTGATTTGGGTCAATGGCGTGCAGgt                                                                                                >  1:443084/1‑102 (MQ=255)                                                                                                       ttGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGTGAGGGCTTGATTTGGGTCAATGGCGTGCAGgt                                                                                                <  2:443084/102‑1 (MQ=255)                                                                                                                  gCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTAccc                                    <  1:1093174/150‑1 (MQ=255)                                                                                                                      gctacacctgcacgccattgacccaaatcaAGCCCTCGCGCCGGGTTCGCGCGACGATGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCt                                            <  2:1424750‑M1/108‑1 (MQ=255)                                                                                                                         gCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCCCTGCCTGTGTAGCTGCAAGGCTGATTACCCAGGGCTg                             <  1:1403981/150‑1 (MQ=255)                                                                                                                           ggTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑ACCACCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGc                           >  2:1107710/1‑150 (MQ=255)                                                                                                                             tACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCgg                         >  1:328704/1‑150 (MQ=255)                                                                                                                                ttGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGgtg                                                         <  1:1256421/115‑1 (MQ=255)                                                                                                                                ttGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGgtg                                                         >  2:1256421/1‑115 (MQ=255)                                                                                                                                       aTTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCgg                         >  1:1206492/1‑140 (MQ=255)                                                                                                                                       aTTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCgg                         <  2:1206492/140‑1 (MQ=255)                                                                                                                                                gTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCGGGCTGCCTCATTACCGTCtt      <  2:133314/150‑1 (MQ=255)                                                                                                                                                    AGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCCGGCGTGCTGCCTCATTACCGTCTTGAcc  >  1:1107710‑M1/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                       TTGCGAGCATGTGGGGAAAGGTCGGTGGCAACCAGTATGTGTTTCAGCGGGTTCATGTGGGGCTCCTTGGTCAAGGCGCGCACAGCGATCAAGCGGTAAACCTTGCGCACTGTGCACCTGGCGGTACTTGAGTCATTCCTTGCGTGCAGCCATCGTCGCGCGAACCCGGCGCGAGGGCTTGATTTGGGTCAATGGCGTGCAGGTGTAGCGGCAGGTCATG‑CCTGCCAACAGCACTGCCGGTGTAGCTGCAAGGCTGATTACCCAGGGCTGGCGGGCTGCCTCATTACCGTCTTGACC  >  NC_002947/3036344‑3036640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.