| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3100052 = | 40 (0.760) | 4 (0.080) | 4/232 | NT | 9.6% | coding (788/1470 nt) | PP_2709 | long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | 3100119 = | 38 (0.770) | coding (855/1470 nt) | PP_2709 | long‑chain fatty acid‑‑CoA ligase | |||||
GTGCGGTTGAGCGCCACTACCGAGGCGCACTCGGACAAGCCGTAACCTTCGAACACCGGCAAACCGACTGCCTCGGCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3100190‑3100052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccgaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGG > NC_002947/3100119‑3100217 GTGCGGTTGAGCGCCACTACCGAGGCGCACTCGGACAAGCCGTAACCTTCGAACACCGGCAAACCGACTGCCTCGGCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGC > 1:119256/1‑136GTGCGGTTGAGCGCCACTACCGAGGCGCACTCGGACAAGCCGTAACCTTCGAACACCGGCAAACCGACTGCCTCGGCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGC < 2:119256/136‑1 CACTACCGAGGCGCACTCGGACAAGCCGTAACCTTCGAACACCGGCAAACCGACTGCCTCGGCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGC < 1:485861/122‑1 CACTACCGAGGCGCACTCGGACAAGCCGTAACCTTCGAACACCGGCAAACCGACTGCCTCGGCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGC > 2:485861/1‑122 GCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCC > 1:592031/1‑150 CGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGC > 1:357364/1‑123 CGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGC < 2:357364/123‑1 GGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGG < 2:592031/150‑1 GTGCGGTTGAGCGCCACTACCGAGGCGCACTCGGACAAGCCGTAACCTTCGAACACCGGCAAACCGACTGCCTCGGCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3100190‑3100052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccgaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGG > NC_002947/3100119‑3100217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |