New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3100052 =	40 (0.760)	4 (0.080)	4/232	NT	9.6%	coding (788/1470 nt)	PP_2709	long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	3100119 =	38 (0.770)					coding (855/1470 nt)	PP_2709	long‑chain fatty acid‑‑CoA ligase

CAGCAGCAGTTGGGGATGGGAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTG  >  NC_002947/3099904‑3100200                                                                                                                                                     |                                                                                                                                                     cagcagcagTTGGGGATGGGAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTc                                                                                                                                                     <  2:427184/150‑1 (MQ=255)    cagcagTTGGGGATGGGAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGc                                                                                                                                                  >  1:1374029/1‑150 (MQ=255)         gTTGGGGGTGAGAGGGGTCTTCCAGTTCGTTGTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACt                                                                                                                                             <  2:1374029/150‑1 (MQ=255)                       gggCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCgg                                                                                                                               >  2:670699/1‑150 (MQ=255)                           aaGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAgg                                                                                                                           >  1:1281809/1‑150 (MQ=255)                              ccAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCGGAGCCGGATCCTTGTGCCACAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGGGGTAGGCgg                                                                                                                        >  1:811041/1‑150 (MQ=255)                                 ggTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGc                                                                                                                     >  1:446099/1‑150 (MQ=255)                                  gTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCt                                                                                                                    >  2:995378/1‑150 (MQ=255)                                     gATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCgg                                                                                                                 >  1:371926/1‑150 (MQ=255)                                       tttCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGCGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGt                                                                                                               >  2:494473/1‑150 (MQ=255)                                           aaGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCggg                                                                                                                       <  2:8436/138‑1 (MQ=255)                                           aaGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCggg                                                                                                                       >  1:8436/1‑138 (MQ=255)                                             gcgcCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGcc                                                                                                         >  2:808737/1‑150 (MQ=255)                                               gcCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCaa                                                                                                       <  1:17089/150‑1 (MQ=255)                                               gcCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCaa                                                                                                       <  1:670699/150‑1 (MQ=255)                                               gcCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCaa                                                                                                       >  1:547294/1‑150 (MQ=255)                                                 cTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCgg                                                                                                                 <  1:324042/138‑1 (MQ=255)                                                 cTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCgg                                                                                                                 >  2:324042/1‑138 (MQ=255)                                                  ccgacgctcccagggcgcacagcccctgtgcggttgagcgccactaccgaggcgcactcggacaagccgtaaccttcgaacaccggcaaaccgactgccTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGcc                                                                                                    <  2:592031‑M1/51‑1 (MQ=255)                                                   gTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGGTGGTGACAGCGATCGAGCCCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCt                                                                                                   >  2:754601/1‑150 (MQ=255)                                                            aaTCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTcgcgcg                                                                                          >  2:1158771/1‑150 (MQ=255)                                                               ggcgcacagcccctgtgcggttgagcgccactaccgaggcgcactcggacaagccgtaaccttcgaacaccggcaaaccgactgccTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGc                                                                                       >  1:592031‑M1/87‑150 (MQ=255)                                                                  ccTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGa                                                                                    <  1:528726/150‑1 (MQ=255)                                                                   cTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAg                                                                                   <  1:423243/150‑1 (MQ=255)                                                                    tCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCAGAgg                                                                                  >  1:596859/1‑150 (MQ=255)                                                                        tggtgCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGc                                                                                                 >  2:492425/1‑131 (MQ=255)                                                                        tggtgCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGc                                                                                                 <  1:492425/131‑1 (MQ=255)                                                                           tgCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCgg                                                                           <  1:995378/150‑1 (MQ=255)                                                                             cTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGGATCCGCCAGCCTGCTCGCGTGGGCCGGGAGAGTCGGtt                                                                         >  2:640552/1‑150 (MQ=255)                                                                                       gcgccactaccgaggcgcactcggacaagccgtaaccttcgaacaccggcaaaccgactgccTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTcgcgcg                                                                                          >  1:357364‑M1/63‑123 (MQ=255)                                                                                       gcgccactaccgaggcgcactcggacaagccgtaaccttcgaacaccggcaaaccgactgccTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTcgcgcg                                                                                          <  2:357364‑M1/61‑1 (MQ=255)                                                                                          ccTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATc                                                                                                            >  1:940340/1‑102 (MQ=255)                                                                                          ccTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATc                                                                                                            <  2:940340/102‑1 (MQ=255)                                                                                           cTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGaa                                                           >  1:1284244/1‑150 (MQ=255)                                                                                           cTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGaa                                                           <  2:446099/150‑1 (MQ=255)                                                                                            ttGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAg                                                          <  2:1281809/150‑1 (MQ=255)                                                                                            ttGTGCCGCAGCTGCTGAAGGGATTGGTGCAAGAAATAGATCCCGCTATGATGTAGTGTTGCCCTCTTTGTTGGGTGGCGGTAGGCGGGGCGCGGGTATCCACCAGGCTGCTCAGGAGGCACGACGCAGTAGGTTTGCGGGTGTTCGAAg                                                          <  2:1379030/150‑1 (MQ=255)                                                                                                   gCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACgg                                                   <  2:547294/150‑1 (MQ=255)                                                                                                   gCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCGGATGCGGTTCGGCCCACTGCGTTTGGGGGCGGTAGGCGGAAGCCGACCTTTGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTGCGTAGGTTACgg                                                   >  1:811809/1‑150 (MQ=255)                                                                                                                 ggTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTgcg                                     >  2:627795/1‑150 (MQ=255)                                                                                                                            gCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGTCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTg                          >  1:1227447/1‑150 (MQ=255)                                                                                                                                     cgcgGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAAc                 <  1:494473/150‑1 (MQ=255)                                                                                                                                       cgGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGTCGCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCg               >  1:330412/1‑150 (MQ=255)                                                                                                                                              aTGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAggg        >  2:869398/1‑150 (MQ=255)                                                                                                                                               tGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAgggg       <  1:808737/150‑1 (MQ=255)                                                                                                                                               tGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGAGCCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAgggg       <  1:13614/150‑1 (MQ=255)                                                                                                                                                    gTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCCCCTCGGTAGTGGCGCTCAACCGCACAGGGGCtgtg  >  2:510234/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CAGCAGCAGTTGGGGATGGGAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTG  >  NC_002947/3099904‑3100200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.