New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3100052 =	40 (0.760)	4 (0.080)	4/232	NT	9.6%	coding (788/1470 nt)	PP_2709	long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	3100119 =	38 (0.770)					coding (855/1470 nt)	PP_2709	long‑chain fatty acid‑‑CoA ligase

CTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTGCGCATCGCC  >  NC_002947/3099970‑3100251                                                                                                                                                      |                                                                                                                                     cTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAg                                                                                                                                      <  1:423243/150‑1 (MQ=255)  tCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCAGAgg                                                                                                                                     >  1:596859/1‑150 (MQ=255)         tgCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCgg                                                                                                                              <  1:995378/150‑1 (MQ=255)           cTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGGATCCGCCAGCCTGCTCGCGTGGGCCGGGAGAGTCGGtt                                                                                                                            >  2:640552/1‑150 (MQ=255)                         cTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGaa                                                                                                              <  2:446099/150‑1 (MQ=255)                         cTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGaa                                                                                                              >  1:1284244/1‑150 (MQ=255)                          ttGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAg                                                                                                             <  2:1281809/150‑1 (MQ=255)                          ttGTGCCGCAGCTGCTGAAGGGATTGGTGCAAGAAATAGATCCCGCTATGATGTAGTGTTGCCCTCTTTGTTGGGTGGCGGTAGGCGGGGCGCGGGTATCCACCAGGCTGCTCAGGAGGCACGACGCAGTAGGTTTGCGGGTGTTCGAAg                                                                                                             <  2:1379030/150‑1 (MQ=255)                                 gCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACgg                                                                                                      <  2:547294/150‑1 (MQ=255)                                 gCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCGGATGCGGTTCGGCCCACTGCGTTTGGGGGCGGTAGGCGGAAGCCGACCTTTGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTGCGTAGGTTACgg                                                                                                      >  1:811809/1‑150 (MQ=255)                                               ggTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTgcg                                                                                        >  2:627795/1‑150 (MQ=255)                                                          gCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGTCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTg                                                                             >  1:1227447/1‑150 (MQ=255)                                                                   cgcgGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAAc                                                                    <  1:494473/150‑1 (MQ=255)                                                                     cgGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGTCGCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCg                                                                  >  1:330412/1‑150 (MQ=255)                                                                            aTGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAggg                                                           >  2:869398/1‑150 (MQ=255)                                                                             tGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAgggg                                                          <  1:808737/150‑1 (MQ=255)                                                                             tGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGAGCCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAgggg                                                          <  1:13614/150‑1 (MQ=255)                                                                                  gTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCCCCTCGGTAGTGGCGCTCAACCGCACAGGGGCtgtg                                                     >  2:510234/1‑150 (MQ=255)                                                                                      gcccgcgcgagcaggcttggcgatacccgagccccgcctaccgccaccaaacgcagtgggccgaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGcc                                                 >  1:592031‑M2/65‑150 (MQ=255)                                                                                      GCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTg                                                                             >  2:485861‑M1/1‑122 (MQ=255)                                                                                      GCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTg                                                                             <  1:485861‑M1/122‑1 (MQ=255)                                                                                      GCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGcac                                                               >  1:119256‑M1/1‑136 (MQ=255)                                                                                      GCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGcac                                                               <  2:119256‑M1/136‑1 (MQ=255)                                                                                         cgcgcgagcaggcttggcgatacccgagccccgcctaccgccaccaaacgcagtgggccgaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGgcgc                                                                         >  1:357364‑M2/62‑123 (MQ=255)                                                                                         cgcgcgagcaggcttggcgatacccgagccccgcctaccgccaccaaacgcagtgggccgaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGgcgc                                                                         <  2:357364‑M2/62‑1 (MQ=255)                                                                                           cTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCTGTTTGCCGGTGTTCGAAGGTTACgg                                                                                                      <  2:356643/92‑1 (MQ=255)                                                                                           cTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCTGTTTGCCGGTGTTCGAAGGTTACgg                                                                                                      >  1:356643/1‑92 (MQ=255)                                                                                            tGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGa                                           <  1:1158771/150‑1 (MQ=255)                                                                                              cGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCtgtg                                                     <  1:169657/138‑1 (MQ=255)                                                                                              cGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCtgtg                                                     >  2:169657/1‑138 (MQ=255)                                                                                               gTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCg                                        >  1:1055144/1‑150 (MQ=255)                                                                                                   ggcttggcgatacccgagccccgcctaccgccaccaaacgcagtgggccgaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCgg                                    <  2:592031‑M2/99‑1 (MQ=255)                                                                                                    gtggCGGTAGGCGGGGCTCGGGTATCTCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGc                                   >  1:903021/1‑150 (MQ=255)                                                                                                     tggCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTTAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCa                                  >  1:944903/1‑150 (MQ=255)                                                                                                     tggCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCa                                  <  2:371926/150‑1 (MQ=255)                                                                                                       gCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCtgt                                                      <  1:1047397/128‑1 (MQ=255)                                                                                                       gCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCtgt                                                      >  2:1047397/1‑128 (MQ=255)                                                                                                        cGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGc                               <  2:811041/150‑1 (MQ=255)                                                                                                                ggggCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGCTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCg                       >  1:533609/1‑150 (MQ=255)                                                                                                                     tCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGa                                           >  1:585019/1‑125 (MQ=255)                                                                                                                     tCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGa                                           <  2:585019/125‑1 (MQ=255)                                                                                                                     tCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGGGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCAtgt                  >  2:235497/1‑150 (MQ=255)                                                                                                                        ggTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACCGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCGTGTGCa               >  1:662691/1‑150 (MQ=255)                                                                                                                               ccAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTgcgc        >  1:902771/1‑150 (MQ=255)                                                                                                                               ccAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTgc          >  2:1299951/1‑148 (MQ=255)                                                                                                                               ccAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTgc          <  1:1299951/148‑1 (MQ=255)                                                                                                                                  aGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGCGTTCGAAGGTTACGGCTTGTCCGAGTACGCCTCGGTAGTGGCGCTCAACCGCACAGGGGATGTGCGCCCTGGGAGCGTCGGCAAACCATTGCCGCATGTGCAGGTGCGCCTc     >  2:651130/1‑150 (MQ=255)                                                                                                                                     cTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCGAGCCATTGCCGCATGTGCAGGTGCGCATCGcc  >  2:1083924/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                     CTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTGCGCATCGCC  >  NC_002947/3099970‑3100251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.