New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3216579 =	56 (1.070)	5 (0.100)	4/238	NT	8.5%	coding (2451/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	3216615 =	54 (1.060)					coding (2487/3129 nt)	mexD	multidrug RND transporter MexD

CCTGGCCGCTGGAGACCTTCTCCTGGTAGGAAAGGCCCGTCCAGGCGTAGCCGATACCTGGCGGCAGCTCGCTGACCAGGCGCTCCATCTCGGCCATTGCCTGCCCGGTACTGTGCCCCGGCGAGGCGTCGCCGGCGATGCGGATCGACGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3216730‑3216579 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggGCACAGTACCGGGCAGGCAATGGCCGAGATGGAGCGCCTGGTCAGCGAGCTGCCGCCAGGTATCGGCTACGCCTGGACGGGCCTTTCCTACCAGGAGAAGGTCTCCAGCGGCCAG  >  NC_002947/3216615‑3216729                                                                                                                                                                                                                                                                             CCTGGCCGCTGGAGACCTTCTCCTGGTAGGAAAGGCCCGTCCAGGCGTAGCCGTTACCTGGCGGCAGCTCGCTGACCAGGCGCTCCATCTCGGCCATTGCCTGCCCGGTACTGTGCCCCGGCGAGGCGTCGCCGGCGATGCGGCTCGACG                                                                                                                       >  1:1104867/1‑150                              GAAAGGCCCGTCCAGGCATAGCCGATACCTGGCGGCAGCTCGCTGACCAGGCGTTCCATCTCGGCCATTGCCTGCCCGGTACTGTGCCCCGGCGAGGCGTCGCCGGCGATGCGGATCGACGG                                                                                                                      <  1:859995/122‑1                              GAAAGGCCCGTCCAGGCATAGCCGATACCTGGCGGCAGCTCGCTGACCAGGCGTTCCATCTCGGCCATTGCCTGCCCGGTACTGTGCCCCGGCGAGGCGTCGCCGGCGATGCGGATCGACGG                                                                                                                      >  2:859995/1‑122                                                                                                    CCTGCCCGGTACTGTGCCCCGGCGAGGCGTCGCCGGCGATGCGGATCGACGGGGCACAGTACCGGGCAGGCAATGGCCGAGAT                                                                                       <  1:1301517/83‑1                                                                                                    CCTGCCCGGTACTGTGCCCCGGCGAGGCGTCGCCGGCGATGCGGATCGACGGGGCACAGTACCGGGCAGGCAATGGCCGAGAT                                                                                       >  2:1301517/1‑83                                                                                                                      CCGGCGAGGCGTCGCCGGCGATGCGGATCGACGGGGCACAGTACCGGGCAGGCAATGGCCGAGATGGAGCGCCTGGTCAGCGAGCTGCCGCCAGGTATCGGCTACGCCTGGACGGGCCTTTCCTACCAGGAGAAGGTCTCCAGCGGCCAG  >  2:1289724/1‑150                                                                                                                      CCGGCGAGGCGTCGCCGGCGATGCGGATCGACGGGGCACAGTACCGGGCAGGCAATGGCCGAGATGGAGCGCCTGGTCAGCGAGCTGCCGCCAGGTATCGGCTACGCCTGGACGGGCCTT                                >  1:692314/1‑120                                                                                                                      CCGGCGAGGCGTCGCCGGCGATGCGGATCGACGGGGCACAGTACCGGGCAGGCAATGGCCGAGATGGAGCGCCTGGTCAGCGAGCTGCCGCCAGGTATCGGCTACGCCTGGACGGGCCTT                                <  2:692314/120‑1                                                                                                                                                                                                                                                                             CCTGGCCGCTGGAGACCTTCTCCTGGTAGGAAAGGCCCGTCCAGGCGTAGCCGATACCTGGCGGCAGCTCGCTGACCAGGCGCTCCATCTCGGCCATTGCCTGCCCGGTACTGTGCCCCGGCGAGGCGTCGCCGGCGATGCGGATCGACGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3216730‑3216579 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggGCACAGTACCGGGCAGGCAATGGCCGAGATGGAGCGCCTGGTCAGCGAGCTGCCGCCAGGTATCGGCTACGCCTGGACGGGCCTTTCCTACCAGGAGAAGGTCTCCAGCGGCCAG  >  NC_002947/3216615‑3216729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.