New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3246271 | 50 (0.950) | 5 (0.100) | 4/240 | NT | 9.2% | coding (483/879 nt) | PP_2841 | site‑specific recombinase |
? | NC_002947 | = 3246295 | 50 (0.980) | coding (507/879 nt) | PP_2841 | site‑specific recombinase |
GCGAGCTGATGGATGTGTGCGCCGCCGACCCGCGGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3246120‑3246271 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagCTGGTGGTTGCCCTTGCCCACCACCTGCAGGCTGCG < NC_002947/3246295‑3246260 GCGAGCTGATGGATGTGTGCGCCGCCGACCCGCGGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGC > 1:471126/1‑150 GAGCTGATGGATGTGTGCGCCGCCGACCCGCGGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAG < 2:548671/150‑1 CGGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACCTCTAGGCGCGCAGCCTGCAGCTGGTGGTTGCCCTTGCCCACCACCTGCAG < 2:555634/150‑1 CACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGCTGGTGGTTGCCCTTGCCCACCACCTGCAGGCTGCG < 1:650616/109‑1 CACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGCTGGTGGTTGCCCTTGCCCACCACCTGCAGGCTGCG > 2:650616/1‑109 ctGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGCTGGTGGTTGCCCTTGCCCACCACCT < 1:997513/75‑1 ctGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGCTGGTGGTTGCCCTTGCCCACCACCT > 2:997513/3‑77 GCGAGCTGATGGATGTGTGCGCCGCCGACCCGCGGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3246120‑3246271 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagCTGGTGGTTGCCCTTGCCCACCACCTGCAGGCTGCG < NC_002947/3246295‑3246260 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |