New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3246271	50 (0.950)	5 (0.100)	4/240	NT	9.2%	coding (483/879 nt)	PP_2841	site‑specific recombinase
	?	NC_002947	= 3246295	50 (0.980)					coding (507/879 nt)	PP_2841	site‑specific recombinase

CGCGGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCTGTTCAACCGCATCCGTCGCGGCAACCACATTACCCGGGCACGC  >  NC_002947/3246150‑3246439                                                                                                                                                  |                                                                                                                                                 cgcgGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTgg                                                                                                                                              <  1:896433/150‑1 (MQ=255) cgcgGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGAAGCGCGACATAGACCTCAACAACATCTAATTTGGGTCAGGCGGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTgg                                                                                                                                              >  1:673840/1‑150 (MQ=255)      ccACAGGGGATACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACAGGCATGCGCAAGTGGGAGTGGGCCGACCTCGACCTCGACCAGGTCGACTTCGAGCCGCGCAGCCTGCAGTTGGGGGGCAAAGGCAACCACCAGCTGGTCAAg                                                                                                                                         >  2:702167/1‑150 (MQ=255)              ggTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCAcc                                                                                                                                 >  2:1132076/1‑150 (MQ=255)                tACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCAccgc                                                                                                                               >  2:1755/1‑150 (MQ=255)                   gTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGt                                                                                                                            <  1:57893/150‑1 (MQ=255)                     gATGCGGCGATCATTGCCTTGCTGTACGGCACTGGTTCGCGTATGTCGGAGTCGGTCGACATGGACGTCGACCAGGTCGACTTCGCGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCCCCAGCTGGTCAAGTACGCACCGCCGTgg                                                                                                                          <  1:154560/150‑1 (MQ=255)                           gcgATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTc                                                                                                                    <  1:1300575/150‑1 (MQ=255)                                cATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGGTCGAGaa                                                                                                               <  1:579631/150‑1 (MQ=255)                                 aTTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAg                                                                                                              >  1:1410575/1‑150 (MQ=255)                                  ttGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGc                                                                                                             <  2:927645/150‑1 (MQ=255)                                     ccTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCGCCGCCGTGGGCGTTCGAGAAGCTGc                                                                                                          >  1:62077/1‑150 (MQ=255)                                     ccTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGc                                                                                                          >  2:1017648/1‑150 (MQ=255)                                      attGCTGTACGGCTCCGGCATGCGGAAGTGGGAGTTTGTCGACATCGACCTCGACCAGCTCGACTTCGAGGCCGGCAGGCTGGAGGAGGGTGTCAAGTGCAACGAACATCTGGTTAAGTACGCACCCACGTGGGCGTTCGAGAAGCTGCa                                                                                                         >  2:246167/2‑150 (MQ=255)                                         gCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGc                                                                                                      <  2:1410575/150‑1 (MQ=255)                                         gCTGTACGGCACCGGCATGCGCAAGTCGGACTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGc                                                                                                      <  1:1755/150‑1 (MQ=255)                                           tGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCt                                                                                                    >  1:1018407/1‑150 (MQ=255)                                           tGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCt                                                                                                    <  2:471126/150‑1 (MQ=255)                                                   ccgtgCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACTATGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGaa                                                                                            <  2:154359/146‑1 (MQ=255)                                                   aCCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCa                                                                                                         >  2:924763/1‑137 (MQ=255)                                                   aCCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCa                                                                                                         <  1:924763/137‑1 (MQ=255)                                                       gCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTgc                                                                                        <  1:1132076/150‑1 (MQ=255)                                                             gcAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCaa                                                                                                                                          >  1:487051/1‑94 (MQ=255)                                                             gcAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCaa                                                                                                                                          <  2:487051/94‑1 (MQ=255)                                                                              gACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCggg                                                                 >  1:994942/1‑150 (MQ=255)                                                                               aagtcgacctggtcgAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGaa                                                                                                               >  2:338132/4‑103 (MQ=255)                                                                                cATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGc                                                               <  1:246167/150‑1 (MQ=255)                                                                                 aTCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCAc                                                                                                                                  >  2:1381191/1‑82 (MQ=255)                                                                                 aTCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCAc                                                                                                                                  <  1:1381191/82‑1 (MQ=255)                                                                                 aTCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCg                                                              >  2:1131567/1‑150 (MQ=255)                                                                                    gacctcgaccAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTgc                                                                                        >  1:735729/1‑121 (MQ=255)                                                                                    gacctcgaccAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTgc                                                                                        <  2:735729/121‑1 (MQ=255)                                                                                    gacctagaccAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTCCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGaa                                                           <  1:254963/150‑1 (MQ=255)                                                                                     acctcgaccAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAg                                                          >  2:1032738/1‑150 (MQ=255)                                                                                     aagtcgaccTGGTCGAGGTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGaa                                                                                            <  1:653357/113‑1 (MQ=255)                                                                                     aagtcgaccTGGTCGAGGTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGaa                                                                                            >  2:653357/4‑116 (MQ=255)                                                                                       ctcgaccAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGAt                                                        >  2:669635/1‑150 (MQ=255)                                                                                        tcgaccAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCt                                                                                                    >  2:69231/1‑105 (MQ=255)                                                                                        tcgaccAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCt                                                                                                    <  1:69231/105‑1 (MQ=255)                                                                                                gTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTc                                               <  1:1174211/150‑1 (MQ=255)                                                                                                  cGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCt                                             <  2:1018407/150‑1 (MQ=255)                                                                                                  cGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCt                                             <  2:673840/150‑1 (MQ=255)                                                                                                   gACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCTg                                            >  2:1375844/1‑150 (MQ=255)                                                                                                          cggCGCGCAGCCTGCAGGGGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCTGTTCAAcc                                     >  2:379551/2‑150 (MQ=255)                                                                                                               cgcAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGctgcaggctgcgcgcctcgaagtcgacctggtcgaggtcgatgtcgaccgactccgacttgcgcatgccggtg                                                                         >  2:650616‑M2/1‑36 (MQ=255)                                                                                                               cgcAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGctgcaggctgcgcgcctcgaagtcgacctggtcgaggtcgatgtcgaccgactccgacttgcgcatgccggtg                                                                         <  1:650616‑M2/109‑74 (MQ=255)                                                                                                                     cTGCAGGTGGTGGGCAAGGGCAACCACCAGctgcaggctgcgcgcctagaggtcgacctggtcgaggtcgatgtcgaccgactccgacttgcgcatgccggtgccgtacagcaaggcaatgatcgccgcatcacgtaccccctgtggccg                          <  2:555634‑M2/150‑121 (MQ=255)                                                                                                                     cTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCTGTTCAACCGCATCCGTcgc                          <  1:1032738/150‑1 (MQ=255)                                                                                                                         aGGTGGTGGGCAAGGGCAACCACCAGctgcaggctgcgcgcctcgaagtcgacctggtcgaggtcgatgtcgaccag                                                                                               <  1:997513‑M2/77‑52 (MQ=255)                                                                                                                         aGGTGGTGGGCAAGGGCAACCACCAGctgcaggctgcgcgcctcgaagtcgacctggtcgaggtcgatgtcgaccag                                                                                               >  2:997513‑M2/1‑26 (MQ=255)                                                                                                                                 ggcaagggcaaCCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCTGTTCAACCGCATCCGTCGCGGCAACCACAtt              >  1:162176/1‑150 (MQ=255)                                                                                                                                     agggcaaCCACCAGCTGGTCAAGTACGCGCCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCTGTTCAACCGCATCCGTCGCGGCAACCACATTAccc          <  2:62077/150‑1 (MQ=255)                                                                                                                                     agggcaaCCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCTGTTCAACCGCATCCGTCGCGGCAACCACATTAccc          <  1:1375844/150‑1 (MQ=255)                                                                                                                                      gggcaaCCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCTGTTCAACCGCATCCGTcgc                          <  1:936325/133‑1 (MQ=255)                                                                                                                                      gggcaaCCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCTGTTCAACCGCATCCGTcgc                          >  2:936325/1‑133 (MQ=255)                                                                                                                                      gggcaaCCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCTGTTCAACCGCATCCGTCGCGGCAACCACATTACCCg         <  2:351863/150‑1 (MQ=255)                                                                                                                                          aaCCACCAGCTGGTCAAGTACGCACCGCCGTGGGTGTTc                                                                                                                    >  1:887035/1‑39 (MQ=255)                                                                                                                                          aaCCACCAGCTGGTCAAGTACGCACCGCCGTGGGTGTTc                                                                                                                    <  2:887035/39‑1 (MQ=255)                                                                                                                                             caccaGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCTGTTCAACCGCATCCGTCGCGGCAACCACATTACCCGGGCACGc  >  1:669075/1‑150 (MQ=255)                                                                                                                                                  gCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGAc                                                     <  2:1111287/94‑1 (MQ=255)                                                                                                                                                  gCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGAc                                                     >  1:1111287/1‑94 (MQ=255)                                                                                                                                                  |                                                                                                                                                 CGCGGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGGTGGTGGGCAAGGGCAACCACCAGCTGGTCAAGTACGCACCGCCGTGGGCGTTCGAGAAGCTGCAGGCCTGGCTTGAACTGCGCCGCCAGGACCTGCCTGCCGGGGCGGAAGATGACCCGTTCCTGTTCAACCGCATCCGTCGCGGCAACCACATTACCCGGGCACGC  >  NC_002947/3246150‑3246439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.