| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3309608 = | 42 (0.800) | 4 (0.080) | 4/234 | NT | 9.0% | coding (680/1251 nt) | lhgO | L‑2‑hydroxyglutarate oxidase |
| ? | NC_002947 | 3309624 = | 41 (0.820) | coding (696/1251 nt) | lhgO | L‑2‑hydroxyglutarate oxidase | |||||
TCGCGCTTCATCGCCAGCACAGCGTTGGGGCCTACGGTGACGGTGCCATCGATCATGCGGGTCAGGTGCACCCCCAGGAAGGGCATCGACGGGTCGGGAATCGGGTAGATCAGGTGGTTGACGATCTGATTGTGCTGCTTGGGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3309755‑3309608‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcaCAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGATGAAGCGCGAGGGCTACCGCAAGAC > NC_002947/3309624‑3309770 TCGCGCTTCATCGCCAGCACAGCGTTGGGGCCTACGGTGACGGTGCCATCGATCATGCGGGTCAGGTGCACCCCCAGGAAGGGCATCGACGGGTCGGGAATCGGGTAGATCAGGTGGTTGACGATCTGATTGTGCTGCTTGGG > 1:616507/1‑143TCGCGCTTCATCGCCAGCACAGCGTTGGGGCCTACGGTGACGGTGCCATCGATCATGCGGGTCAGGTGCACCCCCAGGAAGGGCATCGACGGGTCGGGAATCGGGTAGATCAGGTGGTTGACGATCTGATTGTGCTGCTTGGG < 2:616507/143‑1 GAAGGGCATCGACGGGTCGGGAATCGGGTAGATCAGGTGGTTGACGATCTGATTGTGCTGCCCAAGCAGCACAATCAG > 1:711555/1‑78 GAAGGGCATCGACGGGTCGGGAATCGGGTAGATCAGGTGGTTGACGATCTGATTGTGCTGCCCAAGCAGCACAATCAG < 2:711555/78‑1 GATTGTGCTGCTTGGGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGC > 1:1334233/1‑71 GATTGTGCTGCTTGGGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGC < 2:1334233/71‑1 GCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGATGAAGCGCGAGGGCTACCGCAAGAC > 1:61270/1‑150 GCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGATGAAGCGCGAGGGCTACCGCAAGAC < 2:1073200/150‑1 TCGCGCTTCATCGCCAGCACAGCGTTGGGGCCTACGGTGACGGTGCCATCGATCATGCGGGTCAGGTGCACCCCCAGGAAGGGCATCGACGGGTCGGGAATCGGGTAGATCAGGTGGTTGACGATCTGATTGTGCTGCTTGGGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3309755‑3309608‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcaCAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGATGAAGCGCGAGGGCTACCGCAAGAC > NC_002947/3309624‑3309770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |