New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3309608 =	42 (0.800)	4 (0.080)	4/234	NT	9.0%	coding (680/1251 nt)	lhgO	L‑2‑hydroxyglutarate oxidase
	?	NC_002947	3309624 =	41 (0.820)					coding (696/1251 nt)	lhgO	L‑2‑hydroxyglutarate oxidase

GCAAATGAAGTGATCGTGCGCACCCAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGAT  >  NC_002947/3309460‑3309746                                                                                                                                                     |                                                                                                                                           gCAAATGAAGTGATCGTGCGCACCCAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACctg                                                                                                                                           >  1:908638/1‑150 (MQ=255)  gtcttgcggtagccctcgcgcttcatcgccagcacagcgttggggcctacggtgacggtgccatcgatcatgcgggtcaggtgcacccccaggaagggcatcgacgggtcgggaatcgggtagatcaggtggttgacgatctgattgtgc                                                                                                                                          >  1:61270‑M1/148‑150 (MQ=255)  gtcttgcggtagccctcgcgcttcatcgccagcacagcgttggggcctacggtgacggtgccatcgatcatgcgggtcaggtgcacccccaggaagggcatcgacgggtcgggaatcgggtagatcaggtggttgacgatctgattgtgc                                                                                                                                          <  2:1073200‑M1/3‑1 (MQ=255)           tGATCGTGCGCACCCAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACTTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCAGTGGCGAATACTACCTGCTGCCCAagc                                                                                                                                 >  1:1287151/1‑150 (MQ=255)            gATCGTGCGCACCCAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAagca                                                                                                                                <  2:908638/150‑1 (MQ=255)              tCGTGCGCACCCAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGTGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAagcagc                                                                                                                              >  1:1104987/1‑150 (MQ=255)                     cACCCAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCa                                                                                                                       <  1:753425/150‑1 (MQ=255)                        ccAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGAt                                                                                                                    >  2:843563/1‑150 (MQ=255)                        ccAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGAt                                                                                                                    >  2:314561/1‑150 (MQ=255)                         gaGCGTGATGAACTGCACAGCCTTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTTCCTGCTGCCCAAGCAGCACAATCAGATc                                                                                                                   <  1:113887/149‑1 (MQ=255)                             gTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCa                                                                                                               <  1:314561/150‑1 (MQ=255)                                atgaACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGACTACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAacc                                                                                                            <  1:1358927/150‑1 (MQ=255)                                   aaCTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGAt                                                                                                                    >  1:42291/1‑139 (MQ=255)                                   aaCTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGAt                                                                                                                    <  2:42291/139‑1 (MQ=255)                                      tGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACctg                                                                                                                                           >  2:914163/1‑113 (MQ=255)                                      tGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACctg                                                                                                                                           <  1:914163/113‑1 (MQ=255)                                      tGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGa                                                                                                      <  2:1109467/150‑1 (MQ=255)                                           aGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTAc                                                                                                 >  1:1073200/1‑150 (MQ=255)                                            gCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTAcc                                                                                                <  1:868430/150‑1 (MQ=255)                                               gTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGa                                                                                             >  1:1300490/1‑150 (MQ=255)                                                           ccTGCTCGGGGCTGCGGGCTGACCGCGTGGCGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGa                                                                                      <  1:434079/145‑1 (MQ=255)                                                           ccTGCTCGGGGCTGATGGCTGACCGCGTGGCGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGa                                                                                      >  2:434079/1‑145 (MQ=255)                                                                   gggCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGccc                                                                         <  2:1104987/150‑1 (MQ=255)                                                                           ggCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTggg                                                                 <  1:1072517/150‑1 (MQ=255)                                                                            gCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTgggg                                                                >  1:757961/1‑150 (MQ=255)                                                                            gCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTgggg                                                                >  2:1198407/1‑150 (MQ=255)                                                                              tGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGt                                                              >  1:1231226/1‑150 (MQ=255)                                                                                       ggtggGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCAcgatca                                                     <  2:1287151/150‑6 (MQ=255)                                                                                                 cTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATc                                           <  1:843563/150‑1 (MQ=255)                                                                                                  tCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATc                                                                                                                        >  1:1072352/1‑72 (MQ=255)                                                                                                  tCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATc                                                                                                                        <  2:1072352/72‑1 (MQ=255)                                                                                                   gcatcgacgggtcgggaatcgggtagatcaggtggttgacgatctgattgTGCTGCCCAAGCAGCACAATc                                                                                                                        >  1:1334233‑M1/51‑71 (MQ=255)                                                                                                   gcatcgacgggtcgggaatcgggtagatcaggtggttgacgatctgattgTGCTGCCCAAGCAGCACAATc                                                                                                                        <  2:1334233‑M1/21‑1 (MQ=255)                                                                                                    gggCTGCGTACCGAGTTCGTGATCTGCCCGGTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGAt                                        <  1:1198407/150‑1 (MQ=255)                                                                                                          cGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATc                                                                                                    <  2:377336/84‑1 (MQ=255)                                                                                                          cGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATc                                                                                                    >  1:377336/1‑84 (MQ=255)                                                                                                                 aGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGcaccgtcaccg                           >  2:713651/1‑150 (MQ=255)                                                                                                                  gTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATAGCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGcaccgtcaccgt                          >  1:312929/1‑150 (MQ=255)                                                                                                                   ttCGTGGTCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTa                         >  1:1275552/1‑150 (MQ=255)                                                                                                                     cGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATc                                                                                                                        >  2:1358706/1‑53 (MQ=255)                                                                                                                     cGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATc                                                                                                                        <  1:1358706/53‑1 (MQ=255)                                                                                                                      gTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGa                                                                                             <  1:343952/79‑1 (MQ=255)                                                                                                                      gTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGa                                                                                             >  2:343952/1‑79 (MQ=255)                                                                                                                            tGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTgg                                                                  <  2:1418963/100‑1 (MQ=255)                                                                                                                            tGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTgg                                                                  >  1:1418963/1‑100 (MQ=255)                                                                                                                                       tGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGc     <  2:1300490/150‑1 (MQ=255)                                                                                                                                         gCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGa   >  1:841777/1‑150 (MQ=255)                                                                                                                                          cGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGATCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGAt  <  2:1231226/150‑1 (MQ=255)                                                                                                                                          cGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGAt  <  2:1275552/150‑1 (MQ=255)                                                                                                                                              ctgattgTGCTGCTTGGGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTc                                                                      <  2:711555‑M1/71‑1 (MQ=255)                                                                                                                                              ctgattgTGCTGCTTGGGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTc                                                                      >  1:711555‑M1/8‑78 (MQ=255)                                                                                                                                                 tacCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCa                                                >  2:326432/1‑97 (MQ=255)                                                                                                                                                 tacCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCa                                                <  1:326432/97‑1 (MQ=255)                                                                                                                                                 tacCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATg                                       >  1:1270758/1‑106 (MQ=255)                                                                                                                                                 tacCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATg                                       <  2:1270758/106‑1 (MQ=255)                                                                                                                                                   ccTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTgg                                                                  <  2:1351960/77‑1 (MQ=255)                                                                                                                                                   ccTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTgg                                                                  >  1:1351960/1‑77 (MQ=255)                                                                                                                                                     |                                                                                                                                           GCAAATGAAGTGATCGTGCGCACCCAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGAT  >  NC_002947/3309460‑3309746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.