New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3309608 = | 42 (0.800) | 4 (0.080) | 4/234 | NT | 9.0% | coding (680/1251 nt) | lhgO | L‑2‑hydroxyglutarate oxidase |
? | NC_002947 | 3309624 = | 41 (0.820) | coding (696/1251 nt) | lhgO | L‑2‑hydroxyglutarate oxidase |
CACCCAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGATGAAGCGCGAGGGCTACCGCAAGAC > NC_002947/3309480‑3309770 | cACCCAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCa < 1:753425/150‑1 (MQ=255) ccAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGAt > 2:843563/1‑150 (MQ=255) ccAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGAt > 2:314561/1‑150 (MQ=255) gaGCGTGATGAACTGCACAGCCTTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTTCCTGCTGCCCAAGCAGCACAATCAGATc < 1:113887/149‑1 (MQ=255) gTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCa < 1:314561/150‑1 (MQ=255) atgaACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGACTACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAacc < 1:1358927/150‑1 (MQ=255) aaCTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGAt < 2:42291/139‑1 (MQ=255) aaCTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGAt > 1:42291/1‑139 (MQ=255) tGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGa < 2:1109467/150‑1 (MQ=255) aGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTAc > 1:1073200/1‑150 (MQ=255) gCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTAcc < 1:868430/150‑1 (MQ=255) gTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGa > 1:1300490/1‑150 (MQ=255) ccTGCTCGGGGCTGCGGGCTGACCGCGTGGCGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGa < 1:434079/145‑1 (MQ=255) ccTGCTCGGGGCTGATGGCTGACCGCGTGGCGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGa > 2:434079/1‑145 (MQ=255) gggCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGccc < 2:1104987/150‑1 (MQ=255) ggCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTggg < 1:1072517/150‑1 (MQ=255) gCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTgggg > 2:1198407/1‑150 (MQ=255) gCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTgggg > 1:757961/1‑150 (MQ=255) tGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGt > 1:1231226/1‑150 (MQ=255) ggtggGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCAcgatca < 2:1287151/150‑6 (MQ=255) gaagggcatcgacgggtcgggaatcgggtagatcaggtggttgacgatctgattgtgctgcccaagcagcaCAATCAg < 2:711555‑M2/7‑1 (MQ=255) gaagggcatcgacgggtcgggaatcgggtagatcaggtggttgacgatctgattgtgctgcccaagcagcaCAATCAg > 1:711555‑M2/72‑78 (MQ=255) cTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATc < 1:843563/150‑1 (MQ=255) tCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATc > 1:1072352/1‑72 (MQ=255) tCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATc < 2:1072352/72‑1 (MQ=255) gcatcgacgggtcgggaatcgggtagatcaggtggttgacgatctgattgTGCTGCCCAAGCAGCACAATc < 2:1334233‑M1/21‑1 (MQ=255) gcatcgacgggtcgggaatcgggtagatcaggtggttgacgatctgattgTGCTGCCCAAGCAGCACAATc > 1:1334233‑M1/51‑71 (MQ=255) gggCTGCGTACCGAGTTCGTGATCTGCCCGGTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGAt < 1:1198407/150‑1 (MQ=255) cGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATc > 1:377336/1‑84 (MQ=255) cGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATc < 2:377336/84‑1 (MQ=255) aGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGcaccgtcaccg > 2:713651/1‑150 (MQ=255) gTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATAGCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGcaccgtcaccgt > 1:312929/1‑150 (MQ=255) ttCGTGGTCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTa > 1:1275552/1‑150 (MQ=255) cGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATc < 1:1358706/53‑1 (MQ=255) cGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATc > 2:1358706/1‑53 (MQ=255) gTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGa > 2:343952/1‑79 (MQ=255) gTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGa < 1:343952/79‑1 (MQ=255) tGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTgg > 1:1418963/1‑100 (MQ=255) tGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTgg < 2:1418963/100‑1 (MQ=255) tGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGc < 2:1300490/150‑1 (MQ=255) gCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGa > 1:841777/1‑150 (MQ=255) cGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGATCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGAt < 2:1231226/150‑1 (MQ=255) cGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGAt < 2:1275552/150‑1 (MQ=255) ctgattgTGCTGCTTGGGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTc < 2:711555‑M1/71‑1 (MQ=255) ctgattgTGCTGCTTGGGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTc > 1:711555‑M1/8‑78 (MQ=255) gattgtgctgcttgggcagcaCAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGc > 1:1334233‑M2/22‑71 (MQ=255) gattgtgctgcttgggcagcaCAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGc < 2:1334233‑M2/50‑1 (MQ=255) tacCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCa < 1:326432/97‑1 (MQ=255) tacCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCa > 2:326432/1‑97 (MQ=255) tacCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATg > 1:1270758/1‑106 (MQ=255) tacCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATg < 2:1270758/106‑1 (MQ=255) ccTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTgg < 2:1351960/77‑1 (MQ=255) ccTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTgg > 1:1351960/1‑77 (MQ=255) CCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGATGAAGCGCGa < 2:616507‑M1/143‑1 (MQ=255) CCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGATGAAGCGCGa > 1:616507‑M1/1‑143 (MQ=255) ccAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGCTTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGATGAAGCGCGAGGGCTAcc < 2:1424205/150‑1 (MQ=255) ccAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGATGAAGCGCGAGGGCTAcc < 2:757961/150‑1 (MQ=255) gcaCAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGATGAAGCGCGAGGGCTACCGCAAGAc < 2:1073200‑M2/147‑1 (MQ=255) gcaCAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGATGAAGCGCGAGGGCTACCGCAAGAc > 1:61270‑M2/4‑150 (MQ=255) | CACCCAGCGTGATGAACTGCACAGCCGTTTCCTGGTGACCTGCTCGGGGCTGATGGCTGACCGCGTGGTGGGCATGCTCGGGCTGCGTACCGAGTTCGTGATCTGCCCGTTCCGTGGCGAATACTACCTGCTGCCCAAGCAGCACAATCAGATCGTCAACCACCTGATCTACCCGATTCCCGACCCGTCGATGCCCTTCCTGGGGGTGCACCTGACCCGCATGATCGATGGCACCGTCACCGTAGGCCCCAACGCTGTGCTGGCGATGAAGCGCGAGGGCTACCGCAAGAC > NC_002947/3309480‑3309770 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |