New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3666262 =	46 (0.880)	5 (0.100)	4/234	NT	10.9%	intergenic (+170/‑146)	PP_3229/PP_3230	aliphatic sulfonate‑binding protein/phosphoribosyl transferase domain‑containing protein
	?	NC_002947	3666289 =	38 (0.760)					intergenic (+197/‑119)	PP_3229/PP_3230	aliphatic sulfonate‑binding protein/phosphoribosyl transferase domain‑containing protein

GACATGAACATCTCCCGCGCCGCTACGGGCGCCTGTCACTGCGGTTTCCGATGGGGGCCGTTGGTTGCTTCAAGCCGTGACTGCATGCCCCTCCTCGGGCAACAGGTCGAACTGCGCGAGGCAACGCTGCTCATC‑TGCAAGGGGGGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3666412‑3666262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcgTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTCACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTCATGTCCCATGACCTTGCGTTGCCAACC  >  NC_002947/3666289‑3666434                                                                                                                                                                                                                                                                                                            GACATGAACATCTCCCGCGCCGCTACGGGCGCCTGTCACTGCGGTTTCCGATGGGGGCCGTTGGTTGCTTCAAGCCGTGACTGCATGCCCCTCCTCGGGCAACAGGTCGAACTGCGCGAGGCAACGCTGCTCATC‑TGCAAGGGGGGCAGC                                                                                                                                                     <  2:970502/150‑1                      GCTACGGGCGCCTGTCACTGCGGTTTCCGATGGGGGCCGTTGGTTGCTTCAAGCCGTGACTGCATGCCCCTCCTCGGGCAACAGGTCGAACTGCGCGAGGCAACGCTGCCCCCCTTGC‑AGATGAGCAGCGTTGCCTCGCGCAGTTCGAC                                                                                                                                 <  2:1077631/149‑1                      GCTACGGGCGCCTGTCACTGCGGTTTCCGATGGGGGCCGTTGGTTGCTTCAAGCCGTGACTGCATGCCCCTCCTCGGGCAACAGGTCGAACTGCGCGAGGCAACGCTGCCCCCC‑TTGCAGATGAGCAGCGTTGCCTCGCGCAGTTCGAC                                                                                                                                 >  1:1077631/1‑149                        TACGGGCGCCTGTCACTGCGGTTTCCGATGGGGGCCGTTGGTTGCTTCAAGCCGTGACTGCATGCCCCTCCTCGGGCAACAGGTCGAACTGCGCGAGGCAACGCTGCTCATC‑TGCAAGGGGGG                                                                                                                                                         >  1:125284/1‑123                        TACGGGCGCCTGTCACTGCGGTTTCCGATGGGGGCCGTTGGTTGCTTCAAGCCGTGACTGCATGCCCCTCCTCGGGCAACAGGTCGAACTGCGCGAGGCAACGCTGCTCATC‑TGCAAGGGGGG                                                                                                                                                         <  2:125284/123‑1                                                                                                                                TGCTCATC‑TGCAAGGGGGGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTCACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTCATGTCCC                      >  2:1177232/1‑150                                                                                                                                TGCTCATC‑TGCAAGGGGGGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTCACGGCTTGAAGCAACCAACG                                                                                  <  1:1202655/90‑1                                                                                                                                TGCTCATC‑TGCAAGGGGGGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTCACGGCTTGAAGCAACCAACG                                                                                  >  2:1202655/1‑90                                                                                                                                                     AGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTCACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTAATGTAAAAAGACCTTGAGGTGCAAACg  >  2:280682/1‑149                                                                                                                                                                                                                                                                                                            GACATGAACATCTCCCGCGCCGCTACGGGCGCCTGTCACTGCGGTTTCCGATGGGGGCCGTTGGTTGCTTCAAGCCGTGACTGCATGCCCCTCCTCGGGCAACAGGTCGAACTGCGCGAGGCAACGCTGCTCATC‑TGCAAGGGGGGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3666412‑3666262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcgTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTCACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTCATGTCCCATGACCTTGCGTTGCCAACC  >  NC_002947/3666289‑3666434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.