New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3666262 =	46 (0.880)	5 (0.100)	4/234	NT	10.9%	intergenic (+170/‑146)	PP_3229/PP_3230	aliphatic sulfonate‑binding protein/phosphoribosyl transferase domain‑containing protein
	?	NC_002947	3666289 =	38 (0.760)					intergenic (+197/‑119)	PP_3229/PP_3230	aliphatic sulfonate‑binding protein/phosphoribosyl transferase domain‑containing protein

GCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTCATGTCCCATGACCTTGCGTTGCCAACC  >  NC_002947/3666141‑3666434                                                                                                                                                      |                                                                                                                                                   gCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGtt                                                                                                                                                   <  1:1098775/150‑1 (MQ=255) gCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGtt                                                                                                                                                   <  2:1302253/150‑1 (MQ=255)  ccGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGGGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCTAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTg                                                                                                                                                  >  2:520215/1‑150 (MQ=255)               gcgcGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTc                                                                                                                                     <  1:557484/150‑1 (MQ=255)                    gctacgggcgcctgtcactgcggtttccgatgggggccgttggttgcttcaagccgtgactgcatgcccctcctcgggcaacaggtcgaactgcgcgaggcaacgctgccccccttgcagatgagcagcgTTGCCTCGCGCAGTTCGAc                                                                                                                                  >  1:1077631‑M2/131‑149 (MQ=255)                    gctacgggcgcctgtcactgcggtttccgatgggggccgttggttgcttcaagccgtgactgcatgcccctcctcgggcaacaggtcgaactgcgcgaggcaacgctgccccccttgcagatgagcagcgTTGCCTCGCGCAGTTCGAc                                                                                                                                  <  2:1077631‑M2/19‑1 (MQ=255)                        aTCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTg                                                                                                                            <  1:228863/150‑1 (MQ=255)                         tCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGc                                                                                                                           >  1:752545/1‑150 (MQ=255)                           gACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGccc                                                                                                                         <  1:622043/150‑1 (MQ=255)                                  tCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGaggagg                                                                                                                  >  1:1072283/1‑150 (MQ=255)                                     cACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGc                                                                                                               >  2:781393/1‑150 (MQ=255)                                        cccAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATg                                                                                                            <  1:731859/150‑1 (MQ=255)                                        cccAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATg                                                                                                            <  2:249726/150‑1 (MQ=255)                                         ccAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCAt                                                                                                             <  2:1212302/148‑1 (MQ=255)                                         ccAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCAt                                                                                                             >  1:1212302/1‑148 (MQ=255)                                                    tCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCtt                                                                                               <  2:117410/150‑1 (MQ=255)                                                       gAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGAAAAAGAGCGGCCCGCGGCCACCACCCCGCTTTCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGaa                                                                                            <  2:691750/150‑1 (MQ=255)                                                            gcAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGCGCGCTGCCCCCCTTTCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGcaac                                                                                       <  2:559847/150‑1 (MQ=255)                                                                    gtcatCCGCCTTTCCTTTTCGAAACTCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGcc                                                                               <  2:1370918/146‑1 (MQ=255)                                                                           gcctggcctgTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCg                                                                        <  2:1162603/150‑1 (MQ=255)                                                                                  ctgTTCGAAACGCCGATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCg                                                                 >  2:354766/1‑150 (MQ=255)                                                                                    gTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGaa                                                                                            <  1:113594/121‑1 (MQ=255)                                                                                    gTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGaa                                                                                            >  2:113594/1‑121 (MQ=255)                                                                                    gTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCa                                                               <  2:1284247/150‑1 (MQ=255)                                                                                        gAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACgg                                                                                                  >  2:285599/1‑111 (MQ=255)                                                                                        gAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACgg                                                                                                  <  1:285599/111‑1 (MQ=255)                                                                                        gAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGaa                                                                                            >  1:662493/1‑117 (MQ=255)                                                                                        gAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGaa                                                                                            <  2:662493/117‑1 (MQ=255)                                                                                            cGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAgg                                                       <  1:34275/150‑1 (MQ=255)                                                                                                       gtcgaactgcgcgaggcaaCGCTGCTCATCTGCAA‑GGGGGGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAgc                                             >  1:1077631‑M1/20‑149 (MQ=255)                                                                                                       gtcgaactgcgcgaggcaaCGCTGCTCATCT‑GCAAGGGGGGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAgc                                             <  2:1077631‑M1/130‑1 (MQ=255)                                                                                                         aGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAgcggc                                          >  1:1083062/1‑150 (MQ=255)                                                                                                            gAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCgag                                                                                                                      <  2:346108/72‑1 (MQ=255)                                                                                                            gAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCgag                                                                                                                      >  1:346108/1‑72 (MQ=255)                                                                                                            gAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGcgcg                                       >  1:935029/1‑150 (MQ=255)                                                                                                             aGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCgg                                      <  2:1329629/150‑1 (MQ=255)                                                                                                             aGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCgg                                      >  1:1179564/1‑150 (MQ=255)                                                                                                                 gCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGgaga                                  >  2:1296874/1‑150 (MQ=255)                                                                                                                 gCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGgaga                                  >  1:499933/1‑150 (MQ=255)                                                                                                                  cccGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGC‑GTCGAGGAATGGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGAt                                 >  1:957486/1‑150 (MQ=255)                                                                                                                   ccGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATg                                >  1:1236290/1‑150 (MQ=255)                                                                                                                   ccGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATg                                >  2:1176210/1‑150 (MQ=255)                                                                                                                    cGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGt                               <  1:520215/150‑1 (MQ=255)                                                                                                                           GCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTCATGTc                        <  2:970502‑M1/150‑1 (MQ=255)                                                                                                                              tgctcatctgcaaggggggcagcgTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACg                                                                                  >  2:1202655‑M2/25‑90 (MQ=255)                                                                                                                              tgctcatctgcaaggggggcagcgTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACg                                                                                  <  1:1202655‑M2/66‑1 (MQ=255)                                                                                                                              tgctcatctgcaaggggggcagcgTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTCATGTccc                      >  2:1177232‑M2/25‑150 (MQ=255)                                                                                                                               CCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTa                                               >  1:125284‑M1/1‑123 (MQ=255)                                                                                                                               CCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTa                                               <  2:125284‑M1/123‑1 (MQ=255)                                                                                                                                     ttGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCCGCGCGGGGGATGTTCATTTGCCATGACCtt              >  2:176323/1‑150 (MQ=255)                                                                                                                                       gCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTCATGTCCCATGACCTTGc            <  2:1179564/150‑1 (MQ=255)                                                                                                                                            aTGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTCATGTCCCATGACCTTGCGTTg        >  1:289332/1‑150 (MQ=255)                                                                                                                                            aTGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTCATGTCCCATGACCTTGCGTTg        >  2:288855/1‑150 (MQ=255)                                                                                                                                              gAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTCATGTCCCGTGACCTTGCGTTGcc      >  2:991030/1‑150 (MQ=255)                                                                                                                                                  agcgTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTAATGTAAAAAGACCTTGAGGTGCAAacg  >  2:280682‑M2/5‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGTTCATGTCCCATGACCTTGCGTTGCCAACC  >  NC_002947/3666141‑3666434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.