New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3666262 =	46 (0.880)	5 (0.100)	4/234	NT	10.9%	intergenic (+170/‑146)	PP_3229/PP_3230	aliphatic sulfonate‑binding protein/phosphoribosyl transferase domain‑containing protein
	?	NC_002947	3666289 =	38 (0.760)					intergenic (+197/‑119)	PP_3229/PP_3230	aliphatic sulfonate‑binding protein/phosphoribosyl transferase domain‑containing protein

AGCGGTTTTCTGATCTGCATCAAATGCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGT  >  NC_002947/3666116‑3666405                                                                                                                                                   |                                                                                                                                                  cgtttgcacctcaaggtctttttacattaacatctcccgcgccgctacgggcgcctgtcactgcggtttccgatgggggccgttggttgcttcaagccgtgactgcatgcccctcctcgggcaacaggtcgaactgcgcgaggcaaCGCt                                                                                                                                                >  2:280682‑M1/147‑150 (MQ=255) aGCGGTTTTCTGATCTGCATCAAATGCCGATGCGGGTGTGCGCGGATTATCGACTGAATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCt                                                                                                                                                <  2:452142/150‑1 (MQ=255)                  cATCAAATGCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGa                                                                                                                              >  2:1098775/1‑150 (MQ=255)                  cATCAAATGCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGa                                                                                                                              >  2:1294853/1‑150 (MQ=255)                   aTCAAATGCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGag                                                                                                                             >  1:249726/1‑150 (MQ=255)                    tCAAATGCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGagc                                                                                                                            >  1:1329629/1‑150 (MQ=255)                     gggacatgaacatctcccgcgccgctacgggcgcctgtcactgcggtttccgatgggggccgttggttgcttcaagccgtgactgcatgcccctcctcgggcaacaggtcgaactgcgcgaggcaaCGCTGCCCCCCTTGCA‑GATGagca                                                                                                                           >  2:1177232‑M1/127‑150 (MQ=255)                     cAAATGCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGagca                                                                                                                           <  2:514795/150‑1 (MQ=255)                       aaTGCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGagcagc                                                                                                                         >  2:731859/1‑150 (MQ=255)                        aTGCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCg                                                                                                                        <  1:1294853/150‑1 (MQ=255)                          gCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGtt                                                                                                                      <  1:1098775/150‑1 (MQ=255)                          gCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGtt                                                                                                                      <  2:1302253/150‑1 (MQ=255)                           ccGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGGGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCTAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTg                                                                                                                     >  2:520215/1‑150 (MQ=255)                                        gcgcGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTc                                                                                                        <  1:557484/150‑1 (MQ=255)                                                 aTCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTg                                                                                               <  1:228863/150‑1 (MQ=255)                                                  tCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGc                                                                                              >  1:752545/1‑150 (MQ=255)                                                    gACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGccc                                                                                            <  1:622043/150‑1 (MQ=255)                                                           tCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGaggagg                                                                                     >  1:1072283/1‑150 (MQ=255)                                                              cACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGc                                                                                  >  2:781393/1‑150 (MQ=255)                                                                 cccAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGgcg                                                                                                                                                  <  1:1103153/84‑1 (MQ=255)                                                                 cccAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGgcg                                                                                                                                                  >  2:1103153/1‑84 (MQ=255)                                                                 cccAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATg                                                                               <  1:731859/150‑1 (MQ=255)                                                                 cccAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATg                                                                               <  2:249726/150‑1 (MQ=255)                                                                  ccAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCAt                                                                                >  1:1212302/1‑148 (MQ=255)                                                                  ccAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCAt                                                                                <  2:1212302/148‑1 (MQ=255)                                                                             tCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCtt                                                                  <  2:117410/150‑1 (MQ=255)                                                                                gAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGAAAAAGAGCGGCCCGCGGCCACCACCCCGCTTTCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGaa                                                               <  2:691750/150‑1 (MQ=255)                                                                                 cgttggttgcttcaagccgtgactgcatgcccctcctcgggcaacaggtcgaactgcgcgaggcaaCGCTGCCCCCCTTGCA‑GATGagca                                                                                                                           >  2:1202655‑M1/67‑90 (MQ=255)                                                                                 cgttggttgcttcaagccgtgactgcatgcccctcctcgggcaacaggtcgaactgcgcgaggcaaCGCTGCCCCCCTTGCA‑GATGagca                                                                                                                           <  1:1202655‑M1/24‑1 (MQ=255)                                                                                     gcAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGCGCGCTGCCCCCCTTTCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGcaac                                                          <  2:559847/150‑1 (MQ=255)                                                                                             gtcatCCGCCTTTCCTTTTCGAAACTCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGcc                                                  <  2:1370918/146‑1 (MQ=255)                                                                                                    gcctggcctgTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCg                                           <  2:1162603/150‑1 (MQ=255)                                                                                                           ctgTTCGAAACGCCGATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCg                                    >  2:354766/1‑150 (MQ=255)                                                                                                             gTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGaa                                                               >  2:113594/1‑121 (MQ=255)                                                                                                             gTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGaa                                                               <  1:113594/121‑1 (MQ=255)                                                                                                             gTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCa                                  <  2:1284247/150‑1 (MQ=255)                                                                                                                 gAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACgg                                                                     <  1:285599/111‑1 (MQ=255)                                                                                                                 gAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACgg                                                                     >  2:285599/1‑111 (MQ=255)                                                                                                                 gAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGaa                                                               <  2:662493/117‑1 (MQ=255)                                                                                                                 gAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGaa                                                               >  1:662493/1‑117 (MQ=255)                                                                                                                     cGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAgg                          <  1:34275/150‑1 (MQ=255)                                                                                                                                gtcgaactgcgcgaggcaaCGCTGCTCATCTGCAA‑GGGGGGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAgc                >  1:1077631‑M1/20‑149 (MQ=255)                                                                                                                                gtcgaactgcgcgaggcaaCGCTGCTCATCT‑GCAAGGGGGGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAgc                <  2:1077631‑M1/130‑1 (MQ=255)                                                                                                                                  aGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAgcggc             >  1:1083062/1‑150 (MQ=255)                                                                                                                                     gAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCgag                                                                                         >  1:346108/1‑72 (MQ=255)                                                                                                                                     gAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCgag                                                                                         <  2:346108/72‑1 (MQ=255)                                                                                                                                     gAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGcgcg          >  1:935029/1‑150 (MQ=255)                                                                                                                                      aGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCgg         <  2:1329629/150‑1 (MQ=255)                                                                                                                                      aGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCgg         >  1:1179564/1‑150 (MQ=255)                                                                                                                                          gCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGgaga     >  1:499933/1‑150 (MQ=255)                                                                                                                                          gCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGgaga     >  2:1296874/1‑150 (MQ=255)                                                                                                                                           cccGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGC‑GTCGAGGAATGGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGAt    >  1:957486/1‑150 (MQ=255)                                                                                                                                            ccGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATg   >  1:1236290/1‑150 (MQ=255)                                                                                                                                            ccGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATg   >  2:1176210/1‑150 (MQ=255)                                                                                                                                             cGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGt  <  1:520215/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  AGCGGTTTTCTGATCTGCATCAAATGCCGATGCGGGTGTGCGCGGATTATCGACTGCATCGCACCCCAGCGGCCTTTCTGAAGCGCAATGGGGTGTTCCGCCTGGCCTGTTCGAAACGCCCATGCAGGAAGTGAGCGGCCCGAGGGCGCTGCCCCCCTTGCA‑GATGAGCAGCGTTGCCTCGCGCAGTTCGACCTGTTGCCCGAGGAGGGGCATGCAGTC‑ACGGCTTGAAGCAACCAACGGCCCCCATCGGAAACCGCAGTGACAGGCGCCCGTAGCGGCGCGGGAGATGT  >  NC_002947/3666116‑3666405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.