New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3774485 =	48 (0.910)	5 (0.100)	5/232	NT	10.0%	coding (532/603 nt)	PP_3335	hypothetical protein
	?	NC_002947	3774521 =	45 (0.910)					coding (496/603 nt)	PP_3335	hypothetical protein

TGCGCTCTGGGTAACGACCGATGTTTCCCAGGCCCGTGGCCTGATCCTCGCGTGGCAGCCCATGACTGAATGGATCGTGGAGTGGAAGCCGGGGTTCCGTTCGACCCCGTTCACGCCCCAGGAGGGGGAGGGCTTGCCACCACCGTCCTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3774636‑3774485 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgggGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGCGCAGC  >  NC_002947/3774521‑3774638                                                                                                                                                                                                                                                                                TGCGCTCTGGGTAACGACCGATGTTTCCCAGGCCCGTGGCCTGCTCCGCGCGTGGCAGCCCATGACTGAATGGATCGTGGAGTGGAAGCCGGGGTTCCGTTCGACCCCGTTCACGCCCCAGGAGGGGGAGGGCTTGCCACCACCGTCCTG                                                                                                                          <  1:705070/150‑1                                                                                                                   GCCCCAGGAGGGGGAGGGCTTGCCACCACCGTCCTGGGGC                                                                                                                      >  1:1083455/1‑40                                                                                                                   GCCCCAGGAGGGGGAGGGCTTGCCACCACCGTCCTGGGGC                                                                                                                      <  2:1083455/40‑1                                                                                                                     CCCAGGAGGGGGAGGGCTTGCCACCACCGTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGT                 >  1:432079/1‑139                                                                                                                     CCCAGGAGGGGGAGGGCTTGCCACCACCGTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGT                 <  2:432079/139‑1                                                                                                                       CAGGAGGGGGAGGGCTTGCCACCACCGTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGG                               >  1:1004281/1‑123                                                                                                                       CAGGAGGGGGAGGGCTTGCCACCACCGTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGG                               <  2:1004281/123‑1                                                                                                                         GGAGGGGGAGGGCTTGCCACCACCGTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGCGCAGC  >  2:948964/1‑150                                                                                                                                                                                                                                                                                TGCGCTCTGGGTAACGACCGATGTTTCCCAGGCCCGTGGCCTGATCCTCGCGTGGCAGCCCATGACTGAATGGATCGTGGAGTGGAAGCCGGGGTTCCGTTCGACCCCGTTCACGCCCCAGGAGGGGGAGGGCTTGCCACCACCGTCCTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3774636‑3774485 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgggGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGCGCAGC  >  NC_002947/3774521‑3774638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.