New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3774485 =	48 (0.910)	5 (0.100)	5/232	NT	10.0%	coding (532/603 nt)	PP_3335	hypothetical protein
	?	NC_002947	3774521 =	45 (0.910)					coding (496/603 nt)	PP_3335	hypothetical protein

CATCGTCGGTAACCTCATGTTGGAGCTTGGGCAAAGGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGC  >  NC_002947/3774337‑3774633                                                                                                                                                     |                                                                                                                                                      catcGTCGGTAACCTCATGTTGGAGCTTGGGCAAAGGGTGCAAGGACGGCGGCCGGCCACCGTAAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTcc                                                                                                                                                      <  2:991106/150‑1 (MQ=255)  atcGTCGGTAACCTCATGTTGGAGCTTGGGCAAAGGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTccc                                                                                                                                                     >  1:142851/1‑150 (MQ=255)              gatctGTTGGAGTTTGGGCAAACGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCCGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGgtggtg                                                                                                                                        <  1:625767/146‑1 (MQ=255)              cTCATGTTGGAGCTTGGGCAAAGGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGgtggtg                                                                                                                                        <  2:566952/150‑1 (MQ=255)                    ttGGAGCTTGGGCAAAGGGTGCAAGGACGGCGGCCGGACACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGc                                                                                                                                  >  1:740304/1‑150 (MQ=255)                        aGCTTGGGCAAAGGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGccctc                                                                                                                              <  1:882227/150‑1 (MQ=255)                               gctgcgctctgggtaacgaccgatgtttcccaggcccgtggcctgatcctcgcgtggcagcccatgactgaatggatcgtggagtggaagccggggttccgttcgaccccgttcacgcCCCA‑GGACGGTGGTGGCAAGccctccccctcc                                                                                                                       >  2:948964‑M1/119‑150 (MQ=255)                               gCAAAGGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGTTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGccctccccctcc                                                                                                                       >  1:236207/1‑150 (MQ=255)                               gCAAAGGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGccctccccctcc                                                                                                                       >  1:1357957/1‑150 (MQ=255)                                 aaaGGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTg                                                                                                                     >  1:742103/1‑150 (MQ=255)                                  aaGGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTgg                                                                                                                    <  2:740304/150‑1 (MQ=255)                                              acgaccgatgtttcccaggcccgtggcctgatcctcgcgtggcagcccatgactgaatggatcgtggagtggaagccggggttccgttcgaccccgttcacgcCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTggg                                                                                                                   >  1:432079‑M1/104‑139 (MQ=255)                                              acgaccgatgtttcccaggcccgtggcctgatcctcgcgtggcagcccatgactgaatggatcgtggagtggaagccggggttccgttcgaccccgttcacgcCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTggg                                                                                                                   <  2:432079‑M1/36‑1 (MQ=255)                                              aCGGCGGCCGGCCACCGTCAACTGCTCATGGTTTAGCCGGGCCCCGGAAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACggg                                                                                                        <  2:31484/150‑1 (MQ=255)                                              aCGGCGGCCAGCCACCGTCAACTGATCATGGGTTAGCCTGTCACCTGCATCCAGCGCCTGAAGCTACCCGCGCCTTTACAATCAAGCGGGCTCCCATGGAACACTCATTGCCGATGG‑GGCAAGCCCTCCCCCTCCTGGGGCGTGAACggg                                                                                                        >  2:1379215/1‑150 (MQ=255)                                                ggcggcCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGt                                                                                                      <  2:954647/150‑1 (MQ=255)                                                     ccggccACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAAc                                                                                                 <  1:1379215/150‑1 (MQ=255)                                                          cACCGGCAACTGATCGTGGTTTAGCCGGGCACCGGCACCCAGCGCCTGAAGCTATCCGCGCCGTTGCCACCGAGCGGGCTCCAGGAGGACTCCAA‑GGACGGTGCTGGGCAGCCCTCCAGCCCCTTGGGCGTCACGGGGGGCAAACGGAAc                                                                                            >  2:2372/1‑150 (MQ=255)                                                            ccaggcccgtggcctgatcctcgcgtggcagcccatgactgaatggatcgtggagtggaagccggggttccgttcgaccccgttcacgcCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTg                                                                                                                     >  1:1004281‑M1/90‑123 (MQ=255)                                                            ccaggcccgtggcctgatcctcgcgtggcagcccatgactgaatggatcgtggagtggaagccggggttccgttcgaccccgttcacgcCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTg                                                                                                                     <  2:1004281‑M1/34‑1 (MQ=255)                                                              gTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGt                                                                                                      >  2:1079234/1‑136 (MQ=255)                                                              gTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGt                                                                                                      <  1:1079234/136‑1 (MQ=255)                                                                cAACTGATCATGTTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGc                                                                                      <  2:236207/150‑1 (MQ=255)                                                                  aCTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCtt                                                                                    <  1:1271578/150‑1 (MQ=255)                                                                    tGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTtc                                                                                   >  2:1072627/1‑149 (MQ=255)                                                                    tGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTtc                                                                                   <  1:1072627/149‑1 (MQ=255)                                                                        cATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACgg                                                                                                                                             >  2:179184/1‑87 (MQ=255)                                                                        cATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACgg                                                                                                                                             <  1:179184/87‑1 (MQ=255)                                                                         aTGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTtccactcc                                                                             <  1:863771/150‑1 (MQ=255)                                                                            gTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACg                                                                          >  1:445360/1‑150 (MQ=255)                                                                                aGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGa                                                                                                                                                >  2:1048200/1‑76 (MQ=255)                                                                                aGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGa                                                                                                                                                <  1:1048200/76‑1 (MQ=255)                                                                                       cACCGGCAGCCAGCGCCTGAAGCTACTAGCTCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGt                                                               >  1:397946/1‑150 (MQ=255)                                                                                       cACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGt                                                               >  2:271586/1‑150 (MQ=255)                                                                                            gCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATgg                                                          <  2:445360/150‑1 (MQ=255)                                                                                                      ccTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCAcgc                                                <  2:750981/150‑1 (MQ=255)                                                                                                       cTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCAcgcg                                               >  2:1023140/1‑150 (MQ=255)                                                                                                         gAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAg                                             >  1:237388/1‑150 (MQ=255)                                                                                                                 ccGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATAAGGc                                     >  1:170538/1‑150 (MQ=255)                                                                                                                   gcgcCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACgg                                                                                                         <  2:446205/80‑1 (MQ=255)                                                                                                                   gcgcCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACgg                                                                                                         >  1:446205/1‑80 (MQ=255)                                                                                                                        tttGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGc                              >  2:1325282/1‑150 (MQ=255)                                                                                                                            ccATCGAGCGGGCTCCAGGAGACCTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCCCGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTgg                          <  2:142851/150‑1 (MQ=255)                                                                                                                            ccATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTgg                          <  1:1023140/150‑1 (MQ=255)                                                                                                                             cATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTggg                         >  2:783680/1‑150 (MQ=255)                                                                                                                              aTCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACgggg                                                                                                       >  1:708865/1‑71 (MQ=255)                                                                                                                              aTCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACgggg                                                                                                       <  2:708865/71‑1 (MQ=255)                                                                                                                               tCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGGCATCCTCCTCATGGGGAGTGAACGGGGTCGAACGGAATCCCGGCGACCACGCCACGACCCAATCTGAAATGGCCAACCAAGCCAGTAATAGGCCACGTGACTgtgca                       >  2:249822/1‑146 (MQ=255)                                                                                                                                 gAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATg                                                           >  1:1332420/1‑112 (MQ=255)                                                                                                                                 gAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATg                                                           <  2:1332420/112‑1 (MQ=255)                                                                                                                                       gCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGt               <  2:742103/150‑1 (MQ=255)                                                                                                                                         tCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCa                                                                     >  1:932329/1‑94 (MQ=255)                                                                                                                                         tCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCa                                                                     <  2:932329/94‑1 (MQ=255)                                                                                                                                         tCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCg             >  2:971934/1‑150 (MQ=255)                                                                                                                                            aGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTa          >  2:560479/1‑150 (MQ=255)                                                                                                                                                  aCTCCCC‑GGACGCTGGTCGCAAGTCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCaga    <  2:1149649/150‑1 (MQ=255)                                                                                                                                                   gcCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGc                                                                                                                 >  1:1083455‑M1/3‑40 (MQ=255)                                                                                                                                                   gcCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGc                                                                                                                 <  2:1083455‑M1/38‑1 (MQ=255)                                                                                                                                                    tCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAgc  >  1:469872/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CATCGTCGGTAACCTCATGTTGGAGCTTGGGCAAAGGGTGCAAGGACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGC  >  NC_002947/3774337‑3774633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.