| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3774485 = | 48 (0.910) | 5 (0.100) | 5/232 | NT | 10.0% | coding (532/603 nt) | PP_3335 | hypothetical protein |
| ? | NC_002947 | 3774521 = | 45 (0.910) | coding (496/603 nt) | PP_3335 | hypothetical protein | |||||
ACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGCGCAGCTGCCGCCACCATGAACGCTTCAAT > NC_002947/3774382‑3774662 | aCGGCGGCCGGCCACCGTCAACTGCTCATGGTTTAGCCGGGCCCCGGAAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACggg < 2:31484/150‑1 (MQ=255)aCGGCGGCCAGCCACCGTCAACTGATCATGGGTTAGCCTGTCACCTGCATCCAGCGCCTGAAGCTACCCGCGCCTTTACAATCAAGCGGGCTCCCATGGAACACTCATTGCCGATGG‑GGCAAGCCCTCCCCCTCCTGGGGCGTGAACggg > 2:1379215/1‑150 (MQ=255) ggcggcCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGt < 2:954647/150‑1 (MQ=255) ccggccACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAAc < 1:1379215/150‑1 (MQ=255) cACCGGCAACTGATCGTGGTTTAGCCGGGCACCGGCACCCAGCGCCTGAAGCTATCCGCGCCGTTGCCACCGAGCGGGCTCCAGGAGGACTCCAA‑GGACGGTGCTGGGCAGCCCTCCAGCCCCTTGGGCGTCACGGGGGGCAAACGGAAc > 2:2372/1‑150 (MQ=255) gTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGt < 1:1079234/136‑1 (MQ=255) gTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGt > 2:1079234/1‑136 (MQ=255) cAACTGATCATGTTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGc < 2:236207/150‑1 (MQ=255) aCTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCtt < 1:1271578/150‑1 (MQ=255) tGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTtc < 1:1072627/149‑1 (MQ=255) tGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTtc > 2:1072627/1‑149 (MQ=255) aTGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTtccactcc < 1:863771/150‑1 (MQ=255) gTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACg > 1:445360/1‑150 (MQ=255) cACCGGCAGCCAGCGCCTGAAGCTACTAGCTCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGt > 1:397946/1‑150 (MQ=255) cACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGt > 2:271586/1‑150 (MQ=255) gCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATgg < 2:445360/150‑1 (MQ=255) ccTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCAcgc < 2:750981/150‑1 (MQ=255) cTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCAcgcg > 2:1023140/1‑150 (MQ=255) gAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAg > 1:237388/1‑150 (MQ=255) ccGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATAAGGc > 1:170538/1‑150 (MQ=255) gcgcCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACgg > 1:446205/1‑80 (MQ=255) gcgcCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACgg < 2:446205/80‑1 (MQ=255) tttGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGc > 2:1325282/1‑150 (MQ=255) ccATCGAGCGGGCTCCAGGAGACCTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCCCGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTgg < 2:142851/150‑1 (MQ=255) ccATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTgg < 1:1023140/150‑1 (MQ=255) cATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTggg > 2:783680/1‑150 (MQ=255) aTCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACgggg > 1:708865/1‑71 (MQ=255) aTCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACgggg < 2:708865/71‑1 (MQ=255) tCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGGCATCCTCCTCATGGGGAGTGAACGGGGTCGAACGGAATCCCGGCGACCACGCCACGACCCAATCTGAAATGGCCAACCAAGCCAGTAATAGGCCACGTGACTgtgca > 2:249822/1‑146 (MQ=255) gAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATg > 1:1332420/1‑112 (MQ=255) gAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATg < 2:1332420/112‑1 (MQ=255) gCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGt < 2:742103/150‑1 (MQ=255) tCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCa > 1:932329/1‑94 (MQ=255) tCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCa < 2:932329/94‑1 (MQ=255) tCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCg > 2:971934/1‑150 (MQ=255) aGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTa > 2:560479/1‑150 (MQ=255) aCTCCCC‑GGACGCTGGTCGCAAGTCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCaga < 2:1149649/150‑1 (MQ=255) gcCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGc > 1:1083455‑M1/3‑40 (MQ=255) gcCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGc < 2:1083455‑M1/38‑1 (MQ=255) tCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAgc > 1:469872/1‑150 (MQ=255) gccccaggagggggagggcttgccaccaccgtcctgggGc < 2:1083455‑M2/2‑1 (MQ=255) gccccaggagggggagggcttgccaccaccgtcctgggGc > 1:1083455‑M2/39‑40 (MQ=255) cccaggagggggagggcttgccaccaccgtcctgggGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGt > 1:432079‑M2/37‑139 (MQ=255) cccaggagggggagggcttgccaccaccgtcctgggGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGt < 2:432079‑M2/103‑1 (MQ=255) CA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGCGGAGCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGCGCa < 1:705070‑M1/150‑1 (MQ=255) caggagggggagggcttgccaccaccgtcctgggGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTgg > 1:1004281‑M2/35‑123 (MQ=255) caggagggggagggcttgccaccaccgtcctgggGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTgg < 2:1004281‑M2/89‑1 (MQ=255) ggagggggagggcttgccaccaccgtcctgggGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGCGCAGc > 2:948964‑M2/33‑150 (MQ=255) cGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGCGCAGCTgc < 1:271586/150‑1 (MQ=255) gtggtgGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATc > 1:1128757/1‑71 (MQ=255) gtggtgGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATc < 2:1128757/71‑1 (MQ=255) tggtggCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGACTTGGAAACATCGGTCGTTACCCAGAGCGCAGCTgccgc > 1:435451/1‑150 (MQ=255) gCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGCGCAGCTGCCGccacca > 1:1188563/1‑150 (MQ=255) ctccccctccTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACAt < 1:181214/110‑1 (MQ=255) ctccccctccTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACAt > 2:181214/1‑110 (MQ=255) ccccctccTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGCGCAGCTGCCGCCACCATGAACGCtt < 2:1188563/150‑1 (MQ=255) ctcctGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCa > 1:1247631/1‑117 (MQ=255) ctcctGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCa < 2:1247631/117‑1 (MQ=255) ctcctGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGCGCAGCTGCCGCCACCATGAACGCTTCAat > 2:1277385/1‑150 (MQ=255) | ACGGCGGCCGGCCACCGTCAACTGATCATGGTTTAGCCGGGCACCGGCAGCCAGCGCCTGAAGCTACCCGCGCCTTTGCCATCGAGCGGGCTCCAGGAGAACTCCCA‑GGACGGTGGTGGCAAGCCCTCCCCCTCCTGGGGCGTGAACGGGGTCGAACGGAACCCCGGCTTCCACTCCACGATCCATTCAGTCATGGGCTGCCACGCGAGGATCAGGCCACGGGCCTGGGAAACATCGGTCGTTACCCAGAGCGCAGCTGCCGCCACCATGAACGCTTCAAT > NC_002947/3774382‑3774662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |