New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3885033 =	56 (1.070)	4 (0.080)	4/240	NT	6.5%	coding (874/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase
	?	NC_002947	3885081 =	60 (1.170)					coding (922/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase

TGCGCCATGCCTTGGCCGCTGTCGGTGATTCGCAGGCGCACATAGTCGCCAGTGCGCAAAGCGCCGTCAGCAGCTTGCTCGGTGGCGATGTGATGATTGTTCGCCTCGATGCGTAGCAGGCCACCGTTGGGCATGGCCTCGC‑GCGCATTGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3885184‑3885033 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagGCGAACAATCATCACATCGCCACCGAGCAAGCTGCTGACGGCGCTTTGCGCACTGGCGACTATGTGCGCCTGCGAATCACCGACAGCGGCCAAGGCATGGCGCAAAGCACGCTGGAGCACGCCTTCGAACCCTTCTTCAGCACCAAG  >  NC_002947/3885081‑3885227                                                                                                                                                                                                                                                                                                              TGCGCCATGCCTTGGCCGCTGTCGGTGATTCGCAGGCGCACATAGTCGCCAGTGCGCAAAGCGCCGTCAGCATCTTGCTCGGTGGCGATGTGATGATTGCTCGCCTCGATGCGTAGCAGGCCACCGTTGGGCATGGCCTCGC‑GCGCATTG                                                                                                                                                       <  2:1324444/150‑1  GCGCCATGCCTTGGCCGCTGTCGGTGATTCGCAGGCGCACATAGTCGCCAGTGCGCAAAGCGCCGTCAGCAGCTTGCTCGGTGGCGATGTGATGATTGTTCGCCTCGATGCGTAGCAGGCCACCGTTGGGCATGGCCTCGC‑GCGCATTGA                                                                                                                                                      <  1:1063417/150‑1   CGCCATGCCTTGGCCGCTGTCGGTGATTCGCAGGCGCACATAGTCGCCAGTGCGCAAAGCGCCGTCAGCAGCTTGCTCGGTGGCGATGTGATGATTGTTCGCCTCGATGCGTAGCAGGCCACCGTTGGGCATGGCCTCGC‑GCGCATTGAG                                                                                                                                                     <  1:612693/150‑1                                                                                                        CCTCGATGCGTAGCAGGCCACCGTTGGGCATGGCCTCGC‑GCGCATTGAGGCGAACAATCATCACATCGCCACCGAGCAAGCTGCTGACGGCGCTTTGCGCACTGGCGACTATGTGCGCCTGCGAATCACCGACAGCGGCCAAGGCATGGC                                                >  1:365112/1‑150                                                                                                         CTCGATGCGTAGCAGGCCACCGTTGGGCATGGCCTCGC‑GCGCATTGAGGCGAACAATCATCACATCGCCACCGAGCAAGCTGCTGACGGCGCTTTGCGCACTGGCGACTATGTGCGCCTGCGAATCACCGACAGCGGCCAAGGCATGGCG                                               >  1:480717/1‑150                                                                                                             ATGCGTAGCAGGCCACCGTTGGGCATGGCCTCGC‑GCGCATTGAGGCGAACAATCATCACATCGCCACCGAGCAAGCTGCTGACGGCGCTTTGCGCACTGGCGACTATGTGCGCCTGCGAATCACCGACAGCGGCCAAGGCATGGCGCAAA                                           <  2:480717/150‑1                                                                                                               GCGTAGCAGGCCACCGTTGGGCATGGCCT‑GCTACGCATCGAGGCGAACAATCATCACATCGCCACCGAGCAAGCTGTTGACGGCGCTTTGCGCACTGGCGACTATGTGCGCCTGCGAATCACCGACAGCGGCCAAGGCATGGCGCAAAGC                                         >  2:628296/1‑150                                                                                                                                                       GAGGCGAACAATCATCACATCGCCACCGAGCAAGCTGCTGACGGCGCTTTGCGCACTGGCGACTATGTGCGCCTGCGAATCACCGACAGCGGCCAAGGCATGGCGCAAAGCACGCTGGAGCACGCCTTCGAACCCTTCTTCAGCACCAAG  >  1:1067267/1‑150                                                                                                                                                                                                                                                                                                              TGCGCCATGCCTTGGCCGCTGTCGGTGATTCGCAGGCGCACATAGTCGCCAGTGCGCAAAGCGCCGTCAGCAGCTTGCTCGGTGGCGATGTGATGATTGTTCGCCTCGATGCGTAGCAGGCCACCGTTGGGCATGGCCTCGC‑GCGCATTGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3885184‑3885033 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagGCGAACAATCATCACATCGCCACCGAGCAAGCTGCTGACGGCGCTTTGCGCACTGGCGACTATGTGCGCCTGCGAATCACCGACAGCGGCCAAGGCATGGCGCAAAGCACGCTGGAGCACGCCTTCGAACCCTTCTTCAGCACCAAG  >  NC_002947/3885081‑3885227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.