New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3967920	33 (0.630)	6 (0.120)	6/238	NT	20.4%	coding (4/1179 nt)	PP_3498	transposase
	?	NC_002947	= 3967989	15 (0.300)					coding (73/1179 nt)	PP_3498	transposase

GACCCCGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3967768‑3967920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACACCTGATCGGGGTGGACACACATCGGTTTAGCGGCCAAGAGGCCCTGCCCGGCGAACTCAGTGCGGTC  <  NC_002947/3967989‑3967842                                                                                                                                                                                                                                                                                                               GACCCCGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGA                                                                                                                                                         <  2:947644/150‑1  ACCCCGGGCAGCGAGGTCAACCAGTTGTTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGAT                                                                                                                                                        >  2:837179/1‑150    CCCGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGG                                                                                                                                                      >  1:831496/1‑150           AGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCTATGTGTGTCCACCCCGATCAGGTGTAATCGATGGTCTCGCC                                                                                                                                               >  2:783299/1‑150                                GGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCTCGCTGCCGTTGGCTTCTTC                                                                                                                          <  2:214227/150‑1                                             CCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTG                                                                                                             >  1:1331532/1‑150                                                                         CGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGT                                                                                 <  2:292499/150‑1                                                                           GACCGCACTGAGTTCGCCGGGTAGGGCCTCTTGGCCGCTAAACCTATGTGTGTCCACCCCGATCAGGTGTAATCGATGGTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCC                                                                               <  1:783299/150‑1                                                                              CGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATC                                                                            <  2:1331532/150‑1                                                                                                                                                        GGTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACACCTGATCGGGGTGGACACACATCGGTTTAGCGGCCAAGAGGCCCTGCCCGGCGAACTCAGTGCGGTC  >  1:837179/1‑150                                                                                                                                                                                                                                                                                                               GACCCCGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3967768‑3967920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACACCTGATCGGGGTGGACACACATCGGTTTAGCGGCCAAGAGGCCCTGCCCGGCGAACTCAGTGCGGTC  <  NC_002947/3967989‑3967842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.