New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3967920	33 (0.630)	6 (0.120)	6/238	NT	20.4%	coding (4/1179 nt)	PP_3498	transposase
	?	NC_002947	= 3967989	15 (0.300)					coding (73/1179 nt)	PP_3498	transposase

CCCGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCT  >  NC_002947/3967771‑3968068                                                                                                                                                      |                                                                                                                                                     cccGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGG                                                                                                                                                      >  1:831496‑M1/1‑150 (MQ=255)  ccGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGa                                                                                                                                                     >  1:1057289/1‑150 (MQ=255)  ccGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGa                                                                                                                                                     <  1:574247/150‑1 (MQ=255)  ccGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGa                                                                                                                                                     >  1:437522/1‑150 (MQ=255)        aGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCTATGTGTGTCCACCCCGATCAGGTGTAATCGATGGtctcgcc                                                                                                                                               >  2:783299‑M1/1‑143 (MQ=255)        aGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGcc                                                                                                                                               >  1:22573/1‑150 (MQ=255)           gcgGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGccccc                                                                                                                                            <  2:437522/150‑1 (MQ=255)                 gCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCTATGTGTGTCCACCCCGATCAGCTGTAATCGATTGACTCGCCCCCGCCGAg                                                                                                                                      >  2:74875/1‑150 (MQ=255)                 gCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGCACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAg                                                                                                                                      <  2:503220/150‑1 (MQ=255)                           tggGGCATATCAGCCCCGAAGACTTGCTCAATACCATCCCACGCGCACCGCACTGAGTTCGCCGGCCAGGGCCTCTTGGCCGCTAAACCGACGTGTGTCCACCCCGATCAGGTGTATTCGATGGACTCGCCCCCGCCGAGGCATCACCGt                                                                                                                            <  2:46823/150‑1 (MQ=255)                             gggCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGactcgccctcgctgccgttggcttcttc                                                                                                                          <  2:214227‑M1/150‑29 (MQ=255)                                   atCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACggt                                                                                                                    >  1:383245/1‑150 (MQ=255)                                          ccGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtg                                                                                                             >  1:1331532‑M1/1‑109 (MQ=255)                                           ctaaGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCg                                                                                                            >  2:240061/3‑150 (MQ=255)                                             aacaCTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTGCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGCGTGTCCACCCCGATCAGGTGTAATCAATGGACTGGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCgaa                                                                                                          <  1:539221/147‑1 (MQ=38)                                             aaGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCgaa                                                                                                          <  2:339568/150‑1 (MQ=255)                                                aCTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGGTGAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCgaagaa                                                                                                       <  1:240061/150‑1 (MQ=255)                                                aCTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCgaagaa                                                                                                       <  2:1036444/150‑1 (MQ=255)                                                  ttGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGc                                                                                                     >  1:1220320/1‑150 (MQ=255)                                                             aaTCCCACGGGGACCGCACGGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCg                                                                                          >  2:379168/2‑150 (MQ=255)                                                                 ccACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAggg                                                                                      >  2:982951/1‑150 (MQ=255)                                                                      cgGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagt                                                                                 <  2:292499‑M1/150‑70 (MQ=255)                                                                        gACCGCACTGAGTTCGCCGGGTAGGGCCTCTTGGCCGCTAAACCTATGTGTGTCCACCCCGATCAGGTGTAATCGATGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtcc                                                                               <  1:783299‑M1/150‑72 (MQ=255)                                                                        gACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAcc                                                                               >  1:837179‑M2/1‑148 (MQ=255)                                                                           cGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtccatc                                                                            <  2:1331532‑M1/150‑75 (MQ=255)                                                                             cACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACGCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaa                                                                          >  1:1234093/1‑150 (MQ=255)                                                                              aCTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaa                                                                         >  1:1413024/1‑150 (MQ=255)                                                                                tGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaaaa                                                                       >  2:933035/1‑150 (MQ=255)                                                                                   gTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCa                                                                    <  1:982951/150‑1 (MQ=255)                                                                                       gCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGt                                                                >  1:792465/1‑150 (MQ=255)                                                                                                ggCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAacac                                                       <  2:1057289/150‑1 (MQ=255)                                                                                                 gCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATcaca                                                                                                                              >  2:1224992/1‑78 (MQ=255)                                                                                                 gCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATcaca                                                                                                                              <  1:1224992/78‑1 (MQ=255)                                                                                                  ccTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGACGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATa                                                                  <  1:1154127/137‑1 (MQ=255)                                                                                                  ccTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATa                                                                  >  2:1154127/1‑137 (MQ=255)                                                                                                       tGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTccc                                                <  1:933035/150‑1 (MQ=255)                                                                                                              tAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTc                                         <  2:831496/150‑1 (MQ=255)                                                                                                                     aTGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGAt                                  <  1:239113/150‑1 (MQ=255)                                                                                                                          tgcccACCCCGATTATGTGCAATCTATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGa                             <  2:792465/147‑1 (MQ=11)                                                                                                                            tCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCATCAACTGATGTGGAGc                           >  2:813160/1‑150 (MQ=255)                                                                                                                                 cccGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGc                      >  2:1322158/1‑150 (MQ=38)                                                                                                                                         ggTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACaa                  >  2:1011418/1‑146 (MQ=31)                                                                                                                                         ggTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACaa                  <  1:1011418/146‑1 (MQ=31)                                                                                                                                          gtgtAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATc             >  1:686551/1‑150 (MQ=11)                                                                                                                                                  gATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcg     <  2:1331532‑M2/150‑77 (MQ=255)                                                                                                                                                     ggtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtccatcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcggtc  >  1:837179‑M1/1‑2 (MQ=255)                                                                                                                                                     ggACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacacctgatcggggtggacacacataggtttagcggccaagaggccctacccggcgaactcagtgcggtc  <  1:783299‑M2/150‑80 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CCCGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCT  >  NC_002947/3967771‑3968068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.