| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3967920 | 33 (0.630) | 6 (0.120) | 6/238 | NT | 20.4% | coding (4/1179 nt) | PP_3498 | transposase |
| ? | NC_002947 | = 3967989 | 15 (0.300) | coding (73/1179 nt) | PP_3498 | transposase | |||||
GACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTGGTCGGGTGATCTACGAAGATCGC > NC_002947/3967842‑3968132 | gACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAcc > 1:837179‑M2/1‑148 (MQ=255) cACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACGCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaa > 1:1234093/1‑150 (MQ=255) aCTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaa > 1:1413024/1‑150 (MQ=255) tGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaaaa > 2:933035/1‑150 (MQ=255) gTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCa < 1:982951/150‑1 (MQ=255) gCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGt > 1:792465/1‑150 (MQ=255) ggCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAacac < 2:1057289/150‑1 (MQ=255) ccTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGACGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATa < 1:1154127/137‑1 (MQ=255) ccTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATa > 2:1154127/1‑137 (MQ=255) tGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTccc < 1:933035/150‑1 (MQ=255) tAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTc < 2:831496/150‑1 (MQ=255) aTGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGAt < 1:239113/150‑1 (MQ=255) tgcccACCCCGATTATGTGCAATCTATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGa < 2:792465/147‑1 (MQ=11) tCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCATCAACTGATGTGGAGc > 2:813160/1‑150 (MQ=255) cccGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGc > 2:1322158/1‑150 (MQ=38) ggTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACaa > 2:1011418/1‑146 (MQ=31) ggTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACaa < 1:1011418/146‑1 (MQ=31) gtgtAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATc > 1:686551/1‑150 (MQ=11) gATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcg < 2:1331532‑M2/150‑77 (MQ=255) ggACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacacctgatcggggtggacacacataggtttagcggccaagaggccctacccggcgaactcagtgcggtc < 1:783299‑M2/150‑80 (MQ=255) aCTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcggtccg < 2:292499‑M2/150‑82 (MQ=255) cACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcggtccgcgtgggatggtcttgagcaagtcttcgg > 1:1331532‑M2/1‑41 (MQ=255) gaagaaGCCAACGGCAGCGAGGGCGAGTccatcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcggtccgcgtgggatggtcttgagcaagtcttcggggctgatatgccc < 2:214227‑M2/150‑123 (MQ=255) ggCGAGAccatcgattacacctgatcggggtggacacacataggtttagcggccaagaggccctgcccggcgaactcagtgcggtccgcgtgggatggtcttgagcaagtcttcggggctgatatgccccaccacctgggccaccgcgct > 2:783299‑M2/1‑7 (MQ=255) | GACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTGGTCGGGTGATCTACGAAGATCGC > NC_002947/3967842‑3968132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |