| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4320675 = | 32 (0.610) | 4 (0.080) | 4/236 | NT | 12.0% | coding (134/627 nt) | PP_3791 | site‑specific recombinase |
| ? | NC_002947 | 4320700 = | 28 (0.560) | coding (109/627 nt) | PP_3791 | site‑specific recombinase | |||||
ACATGGAGGACAAGCCATGAACGCCATTACGACCAGCAGCCATCAGCCTTTGAACAAAGGAAAATTGGTCGGGCAGAAAGCTCCGCTCCGACTGAAAGATATCTGGGCCATTCGGGTAAGGCTCCAAATCGCGGAGGAAACTCGTGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4320824‑4320675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatttGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACC > NC_002947/4320700‑4320848 atATGGAGGACAAGCCACGAAAGGCATTAGGACCAGCAGCCATAAGCCTTTGAACAAAGGAAAATTGGTCGGGCAGAAAGCTTCGCCCCGACTGAAAGATATCTGGGACATTCGGGTAAGGCTCAAAATCGAGGAGGAAACTCATGATTT > 2:83691/3‑150ACATGGAGGACAAGCCATGAACGCCATTACGACCAGCAGCCATCAGCCTTTGAACAAAGGAAAATTGGTCGGGCAGAAAGCTCCGCTCCGACTGAAAGATATCTGGGCCATTCGGGTAAGGCTCCAAATCGCGGAGGAAACTCGTGATTT > 1:70008/1‑150 GGGTAAGGCTCCAAATCGCGGAGGAAACTCGTGATTTGGAGCCTTACCCGAATGGACCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCT > 2:209875/1‑150 CAAATCGCGGAGGAAACTCGTGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGT > 1:1211914/1‑98 CAAATCGCGGAGGAAACTCGTGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGT < 2:1211914/98‑1 GGAGGAAACTCGTGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAG < 1:209875/150‑1 TTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAAC < 1:43915/150‑1 TGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACC < 1:171180/150‑1 ACATGGAGGACAAGCCATGAACGCCATTACGACCAGCAGCCATCAGCCTTTGAACAAAGGAAAATTGGTCGGGCAGAAAGCTCCGCTCCGACTGAAAGATATCTGGGCCATTCGGGTAAGGCTCCAAATCGCGGAGGAAACTCGTGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4320824‑4320675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatttGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACC > NC_002947/4320700‑4320848 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |