New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4320675 =	32 (0.610)	4 (0.080)	4/236	NT	12.0%	coding (134/627 nt)	PP_3791	site‑specific recombinase
	?	NC_002947	4320700 =	28 (0.560)					coding (109/627 nt)	PP_3791	site‑specific recombinase

CAAACTGTACGGGACGTTGGGTTTTCTGCTGCATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGT  >  NC_002947/4320526‑4320824                                                                                                                                                      |                                                                                                                                                      ggttgatcatccttgtcctacctcacatggaggacaagccatgaacgccattacgaccagcagccatcagcctttgaacaaaggaaaattggtcgggcagaaagctccgctccgactgaaagatatctgggccattcgggtaaggctcca                                                                                                                                                       <  1:171180‑M1/1‑1 (MQ=255)  gttgatcatccttgtcctacctcacatggaggacaagccatgaacgccattacgaccagcagccatcagcctttgaacaaaggaaaattggtcgggcagaaagctccgctccgactgaaagatatctgggccattcgggtaaggctccaa                                                                                                                                                      <  1:43915‑M1/2‑1 (MQ=255)     cTGTACGGGACGTTGGGTTTTCTGCTGCATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATc                                                                                                                                                   <  2:657094/150‑1 (MQ=255)      tGTACGGGACGTTGGGTTTTCTGCTGCATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGGAAAGGGCTAAATCa                                                                                                                                                  >  2:70008/1‑150 (MQ=255)         aCGGGACGTTGGGTTTTCTGCTGCATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGa                                                                                                                                               <  2:1138461/150‑1 (MQ=255)                 ttGGGTTTTCTGCTGCATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTtcctc                                                                                                                                       >  2:171180/1‑150 (MQ=255)                 ttGGGTTTTCTGCTGCATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTtcctc                                                                                                                                       >  1:1324072/1‑150 (MQ=255)                  ctacctcacatggaggacaagccatgaacgccattacgaccagcagccatcagcctttgaacaaaggaaaattggtcgggcagaaagctccgctccgactgaaagatatctgggccattcgggtaaggctccAAATCACGAGTTtcctcc                                                                                                                                      <  1:209875‑M1/18‑1 (MQ=255)                     gTTTTCTGCTGCATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTCGTCAGAGCGCAGGCTCGTAGCACGACTTTGTCAACCCAGTCCAATGCTGAAAGGGCTAAATCACGAGTTTCCTCcgcg                                                                                                                                   >  1:1027869/1‑150 (MQ=255)                          ctgctgCATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTg                                                                                                                              <  2:1324072/150‑1 (MQ=255)                            gctgcATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTAGa                                                                                                                            <  2:1348702/150‑1 (MQ=255)                                 aTCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCtt                                                                                                                       >  1:1340349/1‑150 (MQ=255)                                     agccatgaacgccattacgaccagcagccatcagcctttgaacaaaggaaaattggtcgggcagaaagctccgctccgactgaaagatatctggtccattcgggtaaggctccAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTAccc                                                                                                                   >  2:209875‑M1/114‑150 (MQ=255)                                      tATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCg                                                                                                                  >  1:820188/1‑150 (MQ=255)                                             cgcgATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGCAGCTTGGTCACATCGCATGCTCGTAGCTTGAGCTTGTTCTCCACAGCCCGGTGACGAACTGCCAAGGCTCGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGcc                                                                                                           <  1:1096725/150‑1 (MQ=255)                                                 aTGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCCGCCCGCAGGTTCGTAGCTTGAGCCTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGa                                                                                                       <  2:338095/150‑1 (MQ=255)                                                  tGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGat                                                                                                      >  1:973935/1‑150 (MQ=255)                                                     cacGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATc                                                                                                   >  1:451096/1‑150 (MQ=255)                                                      acGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGTTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCt                                                                                                  <  1:1149790/150‑1 (MQ=255)                                                          gCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCa                                                                                              <  2:294457/150‑1 (MQ=255)                                                            tCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGt                                                                                            >  1:44900/1‑150 (MQ=255)                                                               ccATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTcgg                                                                                         >  2:1286763/1‑150 (MQ=255)                                                                            cgcgTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCt                                                                            <  1:226331/150‑1 (MQ=255)                                                                              acaaaggaaaattggtcgggcagaaagctccgctccgactgaaagatatctgggccattcgggtaaggctccAAATCACGAGTTTCCTCCGCGATTTg                                                                                                                              <  2:1211914‑M1/26‑1 (MQ=255)                                                                              acaaaggaaaattggtcgggcagaaagctccgctccgactgaaagatatctgggccattcgggtaaggctccAAATCACGAGTTTCCTCCGCGATTTg                                                                                                                              >  1:1211914‑M1/73‑98 (MQ=255)                                                                                   gcgAAGCTTGGTCAGATCGCAGGCTCGTAGCATGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGAc                                                                     >  2:873822/1‑150 (MQ=255)                                                                                                aGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTg                                                        <  2:820188/150‑1 (MQ=255)                                                                                                  aTCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGtg                                                      <  2:973935/150‑2 (MQ=255)                                                                                                     gCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCaa                                                   >  1:104603/1‑150 (MQ=255)                                                                                                         gCTCGTAGCTTGAGCTTTCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGc                                               >  2:780863/1‑150 (MQ=255)                                                                                                          cTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCt                                              <  1:1286763/150‑1 (MQ=255)                                                                                                           tCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTg                                             <  2:44900/150‑1 (MQ=255)                                                                                                                  ttgagctcgCTATCGATGGCCAGATCGAAAAGGGATAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCCACCAATTTTCCTTTGTTCAAAGGCTGATGgctg                                      <  2:296457/150‑1 (MQ=255)                                                                                                                   tgagcttgCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGgctgc                                     <  2:451096/150‑1 (MQ=255)                                                                                                                            tATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCt                                                           <  2:230095/119‑1 (MQ=255)                                                                                                                            tATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCt                                                           >  1:230095/1‑119 (MQ=255)                                                                                                                                 aTGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCTCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCCACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCg                       >  2:296124/1‑150 (MQ=255)                                                                                                                                     ccAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGccc                                                                        <  1:997111/97‑1 (MQ=255)                                                                                                                                     ccAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGccc                                                                        >  2:997111/1‑97 (MQ=255)                                                                                                                                                 gggCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGtcctc       >  2:43915/1‑150 (MQ=255)                                                                                                                                                    cTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCCAAGGCTGATGGCTGCTGGTCGTAATGGCGCTCATGGCTTGTCCTCCAt    <  1:409756/150‑1 (MQ=255)                                                                                                                                                      AAATCATGAGTTTCCTCCTCGATTTTGAGCCTTACCCGAATGTCCCAGATATCTTTCAGTCGGGGCGAAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTTATGGCTGCTGGTCCTAATGCCTTTCGTGGCTTGTCCTCcatat  >  2:83691‑M1/1‑148 (MQ=255)                                                                                                                                                      AAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCAtgt  >  1:70008‑M1/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CAAACTGTACGGGACGTTGGGTTTTCTGCTGCATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGT  >  NC_002947/4320526‑4320824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.