New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4320675 =	32 (0.610)	4 (0.080)	4/236	NT	12.0%	coding (134/627 nt)	PP_3791	site‑specific recombinase
	?	NC_002947	4320700 =	28 (0.560)					coding (109/627 nt)	PP_3791	site‑specific recombinase

CTGCTGCATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCC  >  NC_002947/4320551‑4320849                                                                                                                                                      |                                                                                                                                                      ctgctgCATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTg                                                                                                                                                       <  2:1324072/150‑1 (MQ=255)   gctgcATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTAGa                                                                                                                                                     <  2:1348702/150‑1 (MQ=255)        aTCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCtt                                                                                                                                                >  1:1340349/1‑150 (MQ=255)            agccatgaacgccattacgaccagcagccatcagcctttgaacaaaggaaaattggtcgggcagaaagctccgctccgactgaaagatatctggtccattcgggtaaggctccAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTAccc                                                                                                                                            >  2:209875‑M1/114‑150 (MQ=255)             tATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCg                                                                                                                                           >  1:820188/1‑150 (MQ=255)                    cgcgATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGCAGCTTGGTCACATCGCATGCTCGTAGCTTGAGCTTGTTCTCCACAGCCCGGTGACGAACTGCCAAGGCTCGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGcc                                                                                                                                    <  1:1096725/150‑1 (MQ=255)                        aTGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCCGCCCGCAGGTTCGTAGCTTGAGCCTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGa                                                                                                                                <  2:338095/150‑1 (MQ=255)                         tGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGat                                                                                                                               >  1:973935/1‑150 (MQ=255)                            cacGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATc                                                                                                                            >  1:451096/1‑150 (MQ=255)                             acGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGTTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCt                                                                                                                           <  1:1149790/150‑1 (MQ=255)                                 gCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCa                                                                                                                       <  2:294457/150‑1 (MQ=255)                                   tCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGt                                                                                                                     >  1:44900/1‑150 (MQ=255)                                      ccATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTcgg                                                                                                                  >  2:1286763/1‑150 (MQ=255)                                                   cgcgTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCt                                                                                                     <  1:226331/150‑1 (MQ=255)                                                     acaaaggaaaattggtcgggcagaaagctccgctccgactgaaagatatctgggccattcgggtaaggctccAAATCACGAGTTTCCTCCGCGATTTg                                                                                                                                                       <  2:1211914‑M1/26‑1 (MQ=255)                                                     acaaaggaaaattggtcgggcagaaagctccgctccgactgaaagatatctgggccattcgggtaaggctccAAATCACGAGTTTCCTCCGCGATTTg                                                                                                                                                       >  1:1211914‑M1/73‑98 (MQ=255)                                                          gcgAAGCTTGGTCAGATCGCAGGCTCGTAGCATGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGAc                                                                                              >  2:873822/1‑150 (MQ=255)                                                                       aGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTg                                                                                 <  2:820188/150‑1 (MQ=255)                                                                         aTCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGtg                                                                               <  2:973935/150‑2 (MQ=255)                                                                            gCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCaa                                                                            >  1:104603/1‑150 (MQ=255)                                                                                gCTCGTAGCTTGAGCTTTCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGc                                                                        >  2:780863/1‑150 (MQ=255)                                                                                 cTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCt                                                                       <  1:1286763/150‑1 (MQ=255)                                                                                  tCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTg                                                                      <  2:44900/150‑1 (MQ=255)                                                                                         ttgagctcgCTATCGATGGCCAGATCGAAAAGGGATAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCCACCAATTTTCCTTTGTTCAAAGGCTGATGgctg                                                               <  2:296457/150‑1 (MQ=255)                                                                                          tgagcttgCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGgctgc                                                              <  2:451096/150‑1 (MQ=255)                                                                                                   tATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCt                                                                                    >  1:230095/1‑119 (MQ=255)                                                                                                   tATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCt                                                                                    <  2:230095/119‑1 (MQ=255)                                                                                                        aTGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCTCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCCACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCg                                                >  2:296124/1‑150 (MQ=255)                                                                                                            ccAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGccc                                                                                                 >  2:997111/1‑97 (MQ=255)                                                                                                            ccAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGccc                                                                                                 <  1:997111/97‑1 (MQ=255)                                                                                                                 gggtaaggctccaaatcgcggaggaaactcgtgatttGGAGCCTTACCCGAATGGACCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCt                                       >  2:209875‑M2/38‑150 (MQ=255)                                                                                                                        gggCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGtcctc                                >  2:43915/1‑150 (MQ=255)                                                                                                                           cTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCCAAGGCTGATGGCTGCTGGTCGTAATGGCGCTCATGGCTTGTCCTCCAt                             <  1:409756/150‑1 (MQ=255)                                                                                                                            caaatcgcggaggaaactcgtgatttGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGt                                                                                >  1:1211914‑M2/27‑98 (MQ=255)                                                                                                                            caaatcgcggaggaaactcgtgatttGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGt                                                                                <  2:1211914‑M2/72‑1 (MQ=255)                                                                                                                             AAATCATGAGTTTCCTCCTCGATTTTGAGCCTTACCCGAATGTCCCAGATATCTTTCAGTCGGGGCGAAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTTATGGCTGCTGGTCCTAATGCCTTTCGTGGCTTGTCCTCcatat                           >  2:83691‑M1/1‑148 (MQ=255)                                                                                                                             AAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCAtgt                           >  1:70008‑M1/1‑150 (MQ=255)                                                                                                                                    ggaggaaactcgtgatttGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAg                    <  1:209875‑M2/132‑1 (MQ=255)                                                                                                                                    gAGTTTTCTCTGCTATTTGGAGCCTTACCCGAATGGCCCATATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAg                    <  2:104603/150‑1 (MQ=255)                                                                                                                                            tccGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGga            >  1:1332424/1‑150 (MQ=255)                                                                                                                                                    ttGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAAc    <  1:43915‑M2/148‑1 (MQ=255)                                                                                                                                                     tGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAAcc   <  1:171180‑M2/149‑1 (MQ=255)                                                                                                                                                      ggAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAAccc  <  2:1332424/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CTGCTGCATCACTATCGCCCGCGATGACACGTGCTCCCCATGAGCAACGTCGCGTACGCGAAGCTTGGTCAGATCGCAGGCTCGTAGCTTGAGCTTGCTATCGATGGCCAGATCGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCC  >  NC_002947/4320551‑4320849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.