| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4563594 = | 41 (0.780) | 3 (0.060) | 3/240 | NT | 7.1% | coding (311/2316 nt) | vgrG‑III | type VI secretion system protein |
| ? | NC_002947 | 4563641 = | 39 (0.760) | coding (264/2316 nt) | vgrG‑III | type VI secretion system protein | |||||
GACAAGCCTGCGCTATTCACCCTTTACAGCGCAGACCGGCCA‑CTGCGTCATGTGCATGGCCTAGTCAGTGCCTTCAGCCAGGGCGAAACCGGCTTTTGTCGCACGCGCTACCACGCCGTGGTCGAGCCGCAGCTGGCCCGCGCGCGGTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4563745‑4563594‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAGTGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGTC > NC_002947/4563641‑4563745 GACAAGCCTGCGCTATTCACCCTTTACAGCGCAGACCGGCCA‑CTGCGTCATGTGCATGGCCTAGTCAGTGCCTTCAGCTAGTGCGAAACCGGCTTTGGTCGCACGCGCTACCACGCCGTGGTCGAGCCGCCGCTGGCCCGCGCGCGGTTG > 1:1157542/1‑150GACAAGCCTGCGCTATTCACCCTTTACAGCGCAGACCGGCCA‑CTGCGTCATGTGCATGGCCTAGTCAGTGCCTTCAGCCAGGGCGAAACCGGCTTTTGTCGCACGCGCTACCACGCCGTGGTCGAGCCGCAGCTGGCCCGCGCGCGGTTG > 2:954338/1‑150 GCCTGCGCTATTCACCCTTTACAGCGCAGACCGGCCATCAGC‑TCATGTGCATGGCCTAGTCAGTGCCTTCAGCCAGGGCGAAACCGGCTTTTGTCGCACGCGCTACCACGCCGTGGTCGAGCCGCAGCTGGCCCGCGCGCGGTTGCGCGT < 1:1084444/150‑1 TCAGTGCCTTCAGCCAGGGCGAAACCGGCTTTTGTCGCACGCGCTACCACGCCGTGGTCGAGCCGCAGCTGGCCCGCGCGCGGTTGC > 1:1424404/1‑87 TCAGTGCCTTCAGCCAGGGCGAAACCGGCTTTTGTCGCACGCGCTACCACGCCGTGGTCGAGCCGCAGCTGGCCCGCGCGCGGTTGC < 2:1424404/87‑1 GCGCTACCACGCCGTGGTCGAGCCGCAGCTGGCCCGCGCGCGGTTGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAGTGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTT > 1:115384/1‑150 CCACGCCGTGGTCGAGCCGCAGCTGGCCCGCGCGCGGTTGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAGTGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGTC > 1:556751/1‑147 CCACGCCGTGGTCGAGCCGCAGCTGGCCCGCGCGCGGTTGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAGTGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGTC < 2:556751/147‑1 GACAAGCCTGCGCTATTCACCCTTTACAGCGCAGACCGGCCA‑CTGCGTCATGTGCATGGCCTAGTCAGTGCCTTCAGCCAGGGCGAAACCGGCTTTTGTCGCACGCGCTACCACGCCGTGGTCGAGCCGCAGCTGGCCCGCGCGCGGTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4563745‑4563594‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAGTGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGTC > NC_002947/4563641‑4563745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |