| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4563594 = | 41 (0.780) | 3 (0.060) | 3/240 | NT | 7.1% | coding (311/2316 nt) | vgrG‑III | type VI secretion system protein |
| ? | NC_002947 | 4563641 = | 39 (0.760) | coding (264/2316 nt) | vgrG‑III | type VI secretion system protein | |||||
TGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGTCGAGGACGTGGCCGAAATCGATATCACTT > NC_002947/4563492‑4563773 | tgcGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAgcgc < 1:940294/150‑1 (MQ=255)aagcctgcgctattcaccctttacagcgcagaccggccactgcgtcatgtgcatggcctagtcagtgccttcagccagggcgaaaccggcttttgtcgcacgCGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAgcgc > 1:115384‑M1/103‑150 (MQ=255) gcctgcgctattcaccctttacagcgcagaccggccatcagctcatgtgcatggcctagtcagtgccttcagccagggcgaaaccggcttttgtcgcacgcgctaccacgccgtggtcgagccgcagctggcccgcgcgcggttgcgCGt < 1:1084444‑M2/3‑1 (MQ=255) gcgcTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGTTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTg < 1:1319247/150‑1 (MQ=255) gcgcTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTg > 2:1273165/1‑150 (MQ=255) aGCTCAAAGCGGGTGATGCCCTGGCGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCg < 2:222336/150‑1 (MQ=255) aTGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTg > 1:660678/1‑150 (MQ=255) gCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGaa < 1:40105/150‑1 (MQ=255) cccgACCCTTGAACAAGAGGGCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAgg < 2:660678/147‑1 (MQ=38) aCGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACt < 1:1273165/150‑1 (MQ=255) tGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTTGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTa < 2:1261766/150‑1 (MQ=255) tCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCa > 2:163834/1‑144 (MQ=255) tCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCa < 1:163834/144‑1 (MQ=255) aaGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATg > 1:33999/1‑150 (MQ=255) aGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTgg > 1:1251511/1‑120 (MQ=255) aGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTgg < 2:1251511/120‑1 (MQ=255) gAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGAc > 2:515359/1‑150 (MQ=255) gCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGcc < 2:389595/97‑1 (MQ=255) gCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGcc > 1:389595/1‑97 (MQ=255) gCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGa < 2:620055/140‑1 (MQ=255) gCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGa > 1:620055/1‑140 (MQ=255) aCGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCt < 2:868524/106‑1 (MQ=255) aCGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCt > 1:868524/1‑106 (MQ=255) ctgAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGcc < 1:817632/84‑1 (MQ=255) ctgAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGcc > 2:817632/1‑84 (MQ=255) tgAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTaa > 1:954338/1‑150 (MQ=255) tgAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTaa > 2:1153959/1‑150 (MQ=255) aaGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAgg < 1:515359/150‑1 (MQ=255) tCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCt > 1:730466/1‑139 (MQ=255) tCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCt < 2:730466/139‑1 (MQ=255) cGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAAt > 2:1309212/1‑150 (MQ=255) gCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGt < 1:217057/145‑1 (MQ=255) gCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGt > 2:217057/1‑145 (MQ=255) cGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAgg < 1:1309212/150‑1 (MQ=255) acgCGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGA‑GCTGATGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGc < 1:1084444‑M1/147‑1 (MQ=255) gcgctaccacgccgtggtcgagccgcagctggcccgcgcgcggttgcgCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCtt > 1:115384‑M2/49‑150 (MQ=255) GCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGa > 1:1424404‑M1/1‑87 (MQ=255) GCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGa < 2:1424404‑M1/87‑1 (MQ=255) CAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGTc > 2:954338‑M1/1‑150 (MQ=255) CAACCGCGCGCGGGCCAGCGGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACCAAAGCCGGTTTCGCACTAGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGTc > 1:1157542‑M1/1‑150 (MQ=255) ccacgccgtggtcgagccgcagctggcccgcgcgcggttgcgCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGTc < 2:556751‑M2/105‑1 (MQ=255) ccacgccgtggtcgagccgcagctggcccgcgcgcggttgcgCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGTc > 1:556751‑M2/43‑147 (MQ=255) gggCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGTCGCGGACGTggg > 2:526389/1‑149 (MQ=255) catcTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACAt < 1:1315068/77‑1 (MQ=255) cGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACAt > 2:1315068/1‑80 (MQ=255) gCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGt < 2:78075/126‑1 (MQ=255) gCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGt > 1:78075/1‑126 (MQ=255) tCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGca < 2:1104798/73‑1 (MQ=255) tCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGca > 1:1104798/1‑73 (MQ=255) aCCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGTCGAGGACGTGGCCGAAATCGATATCACtt < 1:1153959/150‑1 (MQ=255) cACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAgg > 1:1313834/1‑100 (MQ=255) cACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAgg < 2:1313834/100‑1 (MQ=255) | TGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGCTTGTCGAGGACGTGGCCGAAATCGATATCACTT > NC_002947/4563492‑4563773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |