New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4563594 =	41 (0.780)	3 (0.060)	3/240	NT	7.1%	coding (311/2316 nt)	vgrG‑III	type VI secretion system protein
	?	NC_002947	4563641 =	39 (0.760)					coding (264/2316 nt)	vgrG‑III	type VI secretion system protein

GTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGC  >  NC_002947/4563449‑4563740                                                                                                                                                  |                                                                                                                                                    gTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAAc                                                                                                                                                     >  1:8529/1‑146 (MQ=255) gTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAAc                                                                                                                                                     <  2:8529/146‑1 (MQ=255)            ccGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGGCGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCggg                                                                                                                                      >  1:222336/1‑150 (MQ=255)                       caAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGc                                                                                                                           >  2:1157542/1‑150 (MQ=255)                       caAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGc                                                                                                                           <  2:696637/150‑1 (MQ=255)                                cGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACg                                                                                                                  >  2:32434/1‑150 (MQ=255)                                   aCTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCg                                                                                                               <  2:1298397/150‑1 (MQ=255)                                      tGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCAACAGGAAAATCAGTAGTGCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTgg                                                                                                            <  2:37083/150‑1 (MQ=25)                                         gacaagcctgcgctattcaccctttacagcgcagaccggccactgcgtcatgtgcatggcctagtcagtgccttcagccagggcgaaaccggcttttgtcgcacgCGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTgg                                                                                                            >  1:556751‑M1/106‑147 (MQ=255)                                         gacaagcctgcgctattcaccctttacagcgcagaccggccactgcgtcatgtgcatggcctagtcagtgccttcagccagggcgaaaccggcttttgtcgcacgCGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTgg                                                                                                            <  2:556751‑M1/42‑1 (MQ=255)                                            tgcGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAgcgc                                                                                                      <  1:940294/150‑1 (MQ=255)                                            aagcctgcgctattcaccctttacagcgcagaccggccactgcgtcatgtgcatggcctagtcagtgccttcagccagggcgaaaccggcttttgtcgcacgCGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAgcgc                                                                                                      >  1:115384‑M1/103‑150 (MQ=255)                                               gcgcTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGTTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTg                                                                                                   <  1:1319247/150‑1 (MQ=255)                                               gcgcTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTg                                                                                                   >  2:1273165/1‑150 (MQ=255)                                                           aGCTCAAAGCGGGTGATGCCCTGGCGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCg                                                                                       <  2:222336/150‑1 (MQ=255)                                                                          aTGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTg                                                                        >  1:660678/1‑150 (MQ=255)                                                                            gCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGaa                                                                      <  1:40105/150‑1 (MQ=255)                                                                              cccgACCCTTGAACAAGAGGGCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAgg                                                                    <  2:660678/147‑1 (MQ=38)                                                                                  aCGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACt                                                                <  1:1273165/150‑1 (MQ=255)                                                                                       tGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTTGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTa                                                           <  2:1261766/150‑1 (MQ=255)                                                                                                  tCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCa                                                      >  2:163834/1‑144 (MQ=255)                                                                                                  tCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCa                                                      <  1:163834/144‑1 (MQ=255)                                                                                                    aaGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGc                                                                                                                              <  2:610926/70‑1 (MQ=255)                                                                                                    aaGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGc                                                                                                                              >  1:610926/1‑70 (MQ=255)                                                                                                    aaGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATg                                              >  1:33999/1‑150 (MQ=255)                                                                                                     aGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTgg                                                                           <  2:1251511/120‑1 (MQ=255)                                                                                                     aGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTgg                                                                           >  1:1251511/1‑120 (MQ=255)                                                                                                      gAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGAc                                            >  2:515359/1‑150 (MQ=255)                                                                                                               gCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGcc                                                                                        <  2:389595/97‑1 (MQ=255)                                                                                                               gCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGcc                                                                                        >  1:389595/1‑97 (MQ=255)                                                                                                               gCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGa                                             >  1:620055/1‑140 (MQ=255)                                                                                                               gCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGa                                             <  2:620055/140‑1 (MQ=255)                                                                                                                 aCGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCt                                                                             <  2:868524/106‑1 (MQ=255)                                                                                                                 aCGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCt                                                                             >  1:868524/1‑106 (MQ=255)                                                                                                                            ctgAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGc                                                                                                                              <  2:1351260/46‑1 (MQ=255)                                                                                                                            ctgAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGc                                                                                                                              >  1:1351260/1‑46 (MQ=255)                                                                                                                            ctgAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGcc                                                                                        <  1:817632/84‑1 (MQ=255)                                                                                                                            ctgAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGcc                                                                                        >  2:817632/1‑84 (MQ=255)                                                                                                                             tgAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTaa                    >  2:1153959/1‑150 (MQ=255)                                                                                                                             tgAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTaa                    >  1:954338/1‑150 (MQ=255)                                                                                                                                aaGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAgg                 <  1:515359/150‑1 (MQ=255)                                                                                                                                    tCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCt                        >  1:730466/1‑139 (MQ=255)                                                                                                                                    tCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCt                        <  2:730466/139‑1 (MQ=255)                                                                                                                                      cGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAAt           >  2:1309212/1‑150 (MQ=255)                                                                                                                                       gCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGt               >  2:217057/1‑145 (MQ=255)                                                                                                                                       gCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGt               <  1:217057/145‑1 (MQ=255)                                                                                                                                              cGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAgg   <  1:1309212/150‑1 (MQ=255)                                                                                                                                               acgCGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGA‑GCTGATGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGc  <  1:1084444‑M1/147‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTCGCCCTGGCTGAAGGCACTGACTAGGCCATGCACATGACGCAG‑TGGCCGGTCTGCGCTGTAAAGGGTGAATAGCGCAGGC  >  NC_002947/4563449‑4563740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.