| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4675357 = | 36 (0.680) | 8 (0.190) | 7/200 | NT | 24.2% | intergenic (+10/+94) | PP_4137/chrR | outer membrane siderophore receptor/chromate reductase |
| ? | NC_002947 | 4675415 = | 21 (0.490) | intergenic (+68/+36) | PP_4137/chrR | outer membrane siderophore receptor/chromate reductase | |||||
GACAAGACGCGACCGTTCTTGCAGGCGTTTGTCGACAGGTTTGCGTCATGGGTGAAGTTGAACAGGGCGGTCTGAACCCCTAATCCTGCTGTGCAACGCCCCTGTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4675525‑4675357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCA > NC_002947/4675415‑4675562 GACAAGACGCGACCGTTCTTGCAGGCGTTTGTCGACAGGTTTGCGTCATGGGTGAAGTTGAACAGGGCGGTCTGAACCCCTAATCCTGCTGTGCAACGCCCCTGTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGACG > 2:687491/1‑150 CGACCGTTCTTGCAGGCGTTTGTCGACAGGTTTGCGTCATGGGTGAAGTTGAACAGGGCGGTCTGAACCCCTAATCCTGCTGTGCAACGCCCCTGTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGACGCATTCGCGG < 2:905519/150‑1 CGACCGTTCTTGCAGGCGTTTGTCGACAGGTTTGCGTCATGGGTGAAGTTGAACAGGGCGGTCTGAACCCCTAATCCTGCTGTGCAACGCCCCTGTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGACGCATTCGCGG < 2:1050274/150‑1 ACCGTTCTTGCAGGCGTTTGTCGACAGGTTTGCGTCATGGGTGAAGTTGAACAGGGCGGTCTGAACCCCTAATCCTGCTGTGCAACGCCCCTGTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGACGCATTCGCGGGT > 2:1326129/1‑150 GTTCTTGCAGGCGTTTGTCGACAGGTTTGCGTCATGGGTGAAGTTGAACAGGGCGGTCTGAACCCCTAATCCTGATGTGCAACGCCCCTGTGTAGGAGCGGGTATACCCGCGAATTCGTCGGCAAATTAAATGACGCATTCGCGGGCAAA > 1:454289/1‑150 TTCTTGCAGGCGTTTGTCGACAGGTTTGCGTCATGGGTGAAGTTGAACAGGGCGGTCTGAACCCCTAATCCTGCTGTGCAACGCCCCTGTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAAC > 1:570279/1‑150 GTGAAGTTGAACAGGGCGGTCTGAACCCCTAATCCTGCTGTGCAACGCCCCTGTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAAC > 1:1063850/1‑114 GTTTACCCGCGAATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCAC > 2:1063850/1‑114 GCGAATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTT < 1:1380695/63‑1 GCGAATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTT > 2:1380695/1‑63 AATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTC > 2:1132078/1‑121 AATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTC < 1:1132078/121‑1 AATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAAACTGTCGACAAACGCATGCACGAACGGTCGCGTCT > 2:608328/1‑150 AATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCA > 1:786977/1‑82 AATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCA < 2:786977/82‑1 ACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAAT > 2:1320923/1‑150 CGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATC < 1:1050274/150‑1 TTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTC < 1:639929/69‑1 TTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTC > 2:639929/1‑69 CGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGC < 1:1320923/150‑1 GCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCA > 2:290181/1‑150 GACAAGACGCGACCGTTCTTGCAGGCGTTTGTCGACAGGTTTGCGTCATGGGTGAAGTTGAACAGGGCGGTCTGAACCCCTAATCCTGCTGTGCAACGCCCCTGTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4675525‑4675357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCA > NC_002947/4675415‑4675562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |