New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4675357 =	36 (0.680)	8 (0.190)	7/200	NT	24.2%	intergenic (+10/+94)	PP_4137/chrR	outer membrane siderophore receptor/chromate reductase
	?	NC_002947	4675415 =	21 (0.490)					intergenic (+68/+36)	PP_4137/chrR	outer membrane siderophore receptor/chromate reductase

GACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCA  >  NC_002947/4675279‑4675562                                                                                                                                         |                                                                                                                                                    gACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGc                                                                                                                                        >  1:840251/1‑150 (MQ=255)    aaTGCCCTTTCGACACCGGGGGAAGGTTTTGGGGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGtt                                                                                                                                     <  2:1426488/150‑1 (MQ=255)       gCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGca                                                                                                                                  <  1:316792/150‑1 (MQ=255)            ttCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCTGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCAcagca                                                                                                                             >  1:1326129/1‑150 (MQ=255)                 cacCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGGTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGAtt                                                                                                                        >  2:874912/1‑150 (MQ=255)                    cGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCTACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAgg                                                                                                                     <  1:431322/150‑1 (MQ=255)                       gCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGt                                                                                                                  >  1:109894/1‑150 (MQ=255)                          aaGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTac                                                                                                                                                <  2:919320/117‑1 (MQ=255)                          aaGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTac                                                                                                                                                >  1:919320/1‑117 (MQ=255)                          aaGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCa                                                                                                               >  1:687491/1‑150 (MQ=255)                            ggATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGa                                                                                                             <  2:840251/150‑1 (MQ=255)                                        tATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCCCGGATAAACCCGCTCCTCCACAGCGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCa                                                                                                 >  2:454289/1‑150 (MQ=255)                                                  tttCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCa                                                                                       <  2:109894/150‑1 (MQ=255)                                                       tACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACg                                                                                  >  1:1251278/1‑150 (MQ=255)                                                       tACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGACATTAAATTTGCCGACGCAGATGCGGGTAAGGCGGGTGGTGCACATGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCGCTTGTCAACTTCACCCATGACg                                                                                  >  1:784398/1‑150 (MQ=255)                                                            cTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAggg                                                                                                                                          <  1:1268321/89‑1 (MQ=255)                                                            cTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAggg                                                                                                                                          >  2:1268321/1‑89 (MQ=255)                                                             ttCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGcc                                                                                                        >  2:1173684/1‑122 (MQ=255)                                                             ttCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGcc                                                                                                        <  1:1173684/122‑1 (MQ=255)                                                                 gCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTc                                                                        >  2:697046/1‑150 (MQ=255)                                                                                   gtttacccgcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCAc                                                                                          >  2:1063850‑M2/55‑114 (MQ=255)                                                                                   GTTTACCCGCGAATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCAc                                                                                          >  1:1063850‑M1/1‑114 (MQ=255)                                                                                   GTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGaa                                                      >  1:570279‑M1/1‑150 (MQ=255)                                                                                    TTTGCCCGCGAATGCGTCATTTAATTTGCCGACGAATTCGCGGGTATACCCGCTCCTACACAGGGGCGTTGCACATCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAAc                                                     >  1:454289‑M1/1‑150 (MQ=255)                                                                                       ACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGt                                                  >  2:1326129‑M1/1‑150 (MQ=255)                                                                                         CCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcg                                                <  2:1050274‑M1/150‑1 (MQ=255)                                                                                         CCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcg                                                <  2:905519‑M1/150‑1 (MQ=255)                                                                                           gcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGtt                                                                                                                                     >  2:1380695‑M2/47‑63 (MQ=255)                                                                                           gcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGtt                                                                                                                                     <  1:1380695‑M2/17‑1 (MQ=255)                                                                                              aatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCa                                                                                                               >  1:786977‑M2/44‑82 (MQ=255)                                                                                              aatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCa                                                                                                               <  2:786977‑M2/39‑1 (MQ=255)                                                                                              aatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTc                                                                        >  2:1132078‑M2/44‑121 (MQ=255)                                                                                              aatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTc                                                                        <  1:1132078‑M2/78‑1 (MQ=255)                                                                                              aatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAAACTGTCGACAAACGCATGCACGAACGGTCGCGTCt                                           >  2:608328‑M2/44‑150 (MQ=255)                                                                                                  CGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTc                                       >  2:687491‑M1/1‑150 (MQ=255)                                                                                                         gAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGGGc                                <  1:905519/150‑1 (MQ=255)                                                                                                                   acgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAAt                      >  2:1320923‑M2/23‑150 (MQ=255)                                                                                                                    cgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATc                     <  1:1050274‑M2/129‑1 (MQ=255)                                                                                                                        ttcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTc                                                                                                  >  2:639929‑M2/18‑69 (MQ=255)                                                                                                                        ttcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTc                                                                                                  <  1:639929‑M2/52‑1 (MQ=255)                                                                                                                                      cgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTcgccgc   <  1:1320923‑M2/147‑1 (MQ=255)                                                                                                                                       gcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCa  >  2:290181‑M2/3‑150 (MQ=255)                                                                                                                                         |                                                                                                                                                    GACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCA  >  NC_002947/4675279‑4675562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.