| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4715162 = | 41 (0.780) | 3 (0.060) | 3/230 | NT | 7.1% | coding (347/1932 nt) | PP_4173 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 4715199 = | 40 (0.810) | coding (384/1932 nt) | PP_4173 | two‑component system sensor histidine kinase/response regulator | |||||
CACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTCACCGATGGCCGGGCTGGTGGCTTTGCCCTGTTGCAGGAAGTCGTTGTCCAGGCGGATTTGCTGCAGGCGAATGGGCGCCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4715316‑4715162‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctggaCAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGC > NC_002947/4715199‑4715336 CACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTCACCGATGGCCGGGCTGGTGGCTTTGCCCTGTTGCAGGAAGTCGTTGTCCAGGCGGATTTGCTGCAGGCGAATGGGCGC > 2:1005816/1‑150 CCGACGATCACGCGGCCCAGGTAGTCGTCACCGATGGCCGGGCTGGTGGCTTTGCCCTGTTGCAGGAAGTCGTTGTCCAGGCGGATTTGCTGCAGGCGAATGGGCGC > 1:665521/1‑107 CCGACGATCACGCGGCCCAGGTAGTCGTCACCGATGGCCGGGCTGGTGGCTTTGCCCTGTTGCAGGAAGTCGTTGTCCAGGCGGATTTGCTGCAGGCGAATGGGCGC < 2:665521/107‑1 TTTGCCCTGTTGCAGGAAGTCGTTGTCCAGGCGGATTTGCTGCAGGCGAATGGGCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGAAGTCTGCCTGGGCCGCGTGATCGTCGGCATGTCCGATGAC > 1:435387/1‑150 TCCAGGCGGATTTGCTGCAGGCGAATGGGCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGA < 1:1322819/85‑1 TCCAGGCGGATTTGCTGCAGGCGAATGGGCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGA > 2:1322819/1‑85 GCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGC < 1:730784/145‑1 GCCTGGACAACGACTTCATGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGC > 2:730784/1‑145 CCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCC > 1:1266184/1‑88 CCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCC < 2:1266184/88‑1 GGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAG > 1:715235/1‑99 GGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAG < 2:715235/99‑1 CACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTCACCGATGGCCGGGCTGGTGGCTTTGCCCTGTTGCAGGAAGTCGTTGTCCAGGCGGATTTGCTGCAGGCGAATGGGCGCCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4715316‑4715162‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctggaCAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGC > NC_002947/4715199‑4715336 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |