New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4715162 =	41 (0.780)	3 (0.060)	3/230	NT	7.1%	coding (347/1932 nt)	PP_4173	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4715199 =	40 (0.810)					coding (384/1932 nt)	PP_4173	two‑component system sensor histidine kinase/response regulator

TCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCT  >  NC_002947/4715051‑4715348                                                                                                                                                     |                                                                                                                                                      tCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACa                                                                                                                                                      >  2:1092454/1‑150 (MQ=255)   aGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAAc                                                                                                                                                    >  1:1183553/1‑150 (MQ=255)     cATCCCGCACGTGCGCTTTCTGGAAGGGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCTACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCAGTCGCCTGCAGCAAATCCGCCTGGACAACGa                                                                                                                                                  <  2:389331/150‑1 (MQ=255)         ccGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTc                                                                                                                                              >  2:317439/1‑150 (MQ=255)           gCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGATGTGTTNCAGGCGNCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCt                                                                                                                                            <  1:1102259/150‑1 (MQ=255)                tGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAAc                                                                                                                                       >  1:426365/1‑150 (MQ=255)                     tttCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGc                                                                                                                                  >  2:216619/1‑150 (MQ=255)                        gtcatcggacatgccgacgatcacgcggcccaggcagacttcaccgatggccgggctggtggctttgccctgttgcaggaagtcgttgTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCaaa                                                                                                                               >  1:435387‑M1/89‑150 (MQ=255)                             aGTGCAGGACAGCCGCAACCACATCCTTGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGccac                                                                                                                          <  2:1360587/150‑1 (MQ=255)                                             aaCCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGt                                                                                                          >  1:569261/1‑150 (MQ=255)                                               ccACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATc                                                                                                             >  1:1038663/1‑145 (MQ=255)                                               ccACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATc                                                                                                             <  2:1038663/145‑1 (MQ=255)                                                  caTCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCCGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTgacga                                                                                                     <  1:1140917/150‑1 (MQ=255)                                                      cTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTAc                                                                                                 >  2:1126154/1‑150 (MQ=255)                                                          tgtACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTgg                                                                                             <  2:904535/150‑1 (MQ=255)                                                            tACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGc                                                                                           <  2:1183553/150‑1 (MQ=255)                                                                             cgaAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCAt                                                                          <  1:1092454/150‑1 (MQ=255)                                                                              gaAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCAACACCAGGACCACCGGTGCTGACGACCGGAACCGCGTGATCTTCGGCATg                                                                         >  2:155530/1‑150 (MQ=255)                                                                                    gCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGAt                                                                   <  1:1126154/150‑1 (MQ=255)                                                                                      cAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAg                                                                                                                                     >  1:793860/1‑82 (MQ=255)                                                                                      cAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAg                                                                                                                                     <  2:793860/82‑1 (MQ=255)                                                                                      cAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGATAGGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGa                                                                 >  1:373920/1‑150 (MQ=255)                                                                                      cAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCACCTGCAGCACATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCGTCGGTGACGACTCCCTGGGCCGCGTGATCGTCGGCATGTCCGATgc                                                                 >  2:246298/1‑149 (MQ=255)                                                                                       tttgccctgttgcaggaagtcgttgtccaggcggatttgctgcaggcgaatgggcgcctggaCAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGAAGTCTGCCTGGGCCGCGTGATCGTCGGCATGTCCGATGAc                                                                >  1:435387‑M2/63‑150 (MQ=255)                                                                                       aaCCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAAGCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGAc                                                                <  1:112018/150‑1 (MQ=255)                                                                                        aCCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACg                                                               >  1:1005816/1‑150 (MQ=255)                                                                                              cgcAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTtca                                                         <  1:216619/150‑1 (MQ=255)                                                                                              cgcAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTtca                                                         <  1:155530/150‑1 (MQ=255)                                                                                                   cAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTtcagtcag                                                    >  2:980024/1‑150 (MQ=255)                                                                                                      gTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGt                                                                                      <  2:277620/113‑1 (MQ=255)                                                                                                      gTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGt                                                                                      >  1:277620/1‑113 (MQ=255)                                                                                                          aGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCcagc                                             >  1:1164676/1‑150 (MQ=255)                                                                                                           ggTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGcca                                                                                                                           >  2:1283412/1‑71 (MQ=255)                                                                                                           ggTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGcca                                                                                                                           <  1:1283412/71‑1 (MQ=255)                                                                                                             tgtTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAgg                                          <  1:716283/150‑1 (MQ=255)                                                                                                                tccaggcggatttgctgcaggcgaatgggcgcctggaCAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTga                                                                                                        >  2:1322819‑M2/38‑85 (MQ=255)                                                                                                                tccaggcggatttgctgcaggcgaatgggcgcctggaCAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTga                                                                                                        <  1:1322819‑M2/48‑1 (MQ=255)                                                                                                                   aGGCGCGCATTCGCCTGCAGCAAATCCGCCTGGATAACGACTTGCTGCAACAGGGTAAAGACAGGAGTGAGGATATCGGTGAAGAGTAGGTGGGGAGTGTGATGGTAGGGATGTGGGATGAAGGGTTAAGTAAGAGAAAGGAGGAAAttg                                    >  2:678176/1‑148 (MQ=255)                                                                                                                     GCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCgg                                                                             <  2:665521‑M1/107‑1 (MQ=255)                                                                                                                     GCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCgg                                                                             >  1:665521‑M1/1‑107 (MQ=255)                                                                                                                     GCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTg                                  >  2:1005816‑M1/1‑150 (MQ=255)                                                                                                                          cATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCaa                             <  2:426365/150‑1 (MQ=255)                                                                                                                           aTTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCt                                                                                                                                            <  1:680527/38‑1 (MQ=255)                                                                                                                           aTTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCt                                                                                                                                            >  2:680527/1‑38 (MQ=255)                                                                                                                           aTTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAg                            >  1:770012/1‑150 (MQ=255)                                                                                                                                 cTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGAtcgtcg                                                                              >  2:19686/1‑94 (MQ=255)                                                                                                                                 cTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGAtcgtcg                                                                              <  1:19686/94‑1 (MQ=255)                                                                                                                                    caacaAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATc                   >  1:1425998/4‑150 (MQ=255)                                                                                                                                       caAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCACCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTg                >  2:984947/1‑150 (MQ=255)                                                                                                                                         aaTCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGc              <  1:317439/150‑1 (MQ=255)                                                                                                                                          aTCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCg             >  2:887704/1‑150 (MQ=255)                                                                                                                                              gcctggaCAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGc              <  1:730784‑M2/138‑1 (MQ=255)                                                                                                                                              gcctggaCAACGACTTCATGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGc              >  2:730784‑M2/8‑145 (MQ=255)                                                                                                                                               cctggaCAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTcc                                                                      <  2:1266184‑M2/82‑1 (MQ=255)                                                                                                                                               cctggaCAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTcc                                                                      >  1:1266184‑M2/7‑88 (MQ=255)                                                                                                                                                  ggaCAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTtcag                                                        >  1:715235‑M2/4‑99 (MQ=255)                                                                                                                                                  ggaCAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTtcag                                                        <  2:715235‑M2/96‑1 (MQ=255)                                                                                                                                                     cAACGACTTCCTGCAACAGGGCACAGCCACCAGCCCGGCGATCGGTGAGGCCTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCct  >  1:536097/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCT  >  NC_002947/4715051‑4715348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.