New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4715162 =	41 (0.780)	3 (0.060)	3/230	NT	7.1%	coding (347/1932 nt)	PP_4173	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4715199 =	40 (0.810)					coding (384/1932 nt)	PP_4173	two‑component system sensor histidine kinase/response regulator

AACAACGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGG  >  NC_002947/4715014‑4715308                                                                                                                                                     |                                                                                                                                                   aacaacGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTc                                                                                                                                                   >  2:278319/1‑150 (MQ=255)  acaacGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGCTcc                                                                                                                                                  >  2:1102259/1‑150 (MQ=255)  acaacGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCCAGGTGTTct                                                                                                                                                  <  2:707390/150‑2 (MQ=255)    aacGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAg                                                                                                                                                >  2:1140917/1‑150 (MQ=255)    aacGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAg                                                                                                                                                <  2:489667/150‑1 (MQ=255)           gccaggattccggccttgatcacgatttcctgctggcgctgactgaaggcgtcatcggacatgccgacgatcacgcggcccaggtagtcgtcaccgatggccgggctggtggctttgccctgttgcatgaagtcgttgTCCAGgc                                                                                                                                              >  2:730784‑M1/139‑145 (MQ=255)           gccaggattccggccttgatcacgatttcctgctggcgctgactgaaggcgtcatcggacatgccgacgatcacgcggcccaggtagtcgtcaccgatggccgggctggtggctttgccctgttgcaggaagtcgttgTCCAGgc                                                                                                                                              <  1:730784‑M1/7‑1 (MQ=255)              ttGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTc                                                                                                                                      <  1:767788/150‑1 (MQ=255)                  aGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCt                                                                                                                                  <  1:809527/150‑1 (MQ=255)                  aGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCt                                                                                                                                  <  1:278319/150‑1 (MQ=255)                   gggCTGATGCATGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACCGCCACCGCCAGGTCCTGTTGTACATCGAGCAGTCAGAAGAAAGTGCTCACCCTGCTAAATAGGTCGATGTGTTCCAGGCGCCCATTCGCCTg                                                                                                                                 <  1:1033270/150‑1 (MQ=255)                     gCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTgca                                                                                                                               <  2:1041398/150‑1 (MQ=255)                             gTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATcc                                                                                                                       >  2:716283/1‑150 (MQ=255)                                 cACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCt                                                                                                                   <  2:1163672/150‑1 (MQ=255)                                      tCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACa                                                                                                              >  2:1092454/1‑150 (MQ=255)                                        aGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAAc                                                                                                            >  1:1183553/1‑150 (MQ=255)                                          cATCCCGCACGTGCGCTTTCTGGAAGGGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCTACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCAGTCGCCTGCAGCAAATCCGCCTGGACAACGa                                                                                                          <  2:389331/150‑1 (MQ=255)                                              ccGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTc                                                                                                      >  2:317439/1‑150 (MQ=255)                                                gCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGATGTGTTNCAGGCGNCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCt                                                                                                    <  1:1102259/150‑1 (MQ=255)                                                     tGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAAc                                                                                               >  1:426365/1‑150 (MQ=255)                                                     ctgaaggcgtcatcggacatgccgacgatcacgcggcccaggtagtcgtcaccgatggccgggctggtggctttgccctgttgcaggaagtcgttgTcc                                                                                                                                                  >  1:715235‑M1/97‑99 (MQ=255)                                                     ctgaaggcgtcatcggacatgccgacgatcacgcggcccaggtagtcgtcaccgatggccgggctggtggctttgccctgttgcaggaagtcgttgTcc                                                                                                                                                  <  2:715235‑M1/3‑1 (MQ=255)                                                          tttCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTgca                                                                                                                               <  2:181308/113‑1 (MQ=255)                                                          tttCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTgca                                                                                                                               >  1:181308/1‑113 (MQ=255)                                                          tttCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGc                                                                                          >  2:216619/1‑150 (MQ=255)                                                             gtcatcggacatgccgacgatcacgcggcccaggcagacttcaccgatggccgggctggtggctttgccctgttgcaggaagtcgttgTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCaaa                                                                                       >  1:435387‑M1/89‑150 (MQ=255)                                                                  aGTGCAGGACAGCCGCAACCACATCCTTGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGccac                                                                                  <  2:1360587/150‑1 (MQ=255)                                                                   ggacatgccgacgatcacgcggcccaggtagtcgtcaccgatggccgggctggtggctttgccctgttgcaggaagtcgttgTCCAgg                                                                                                                                               >  1:1266184‑M1/83‑88 (MQ=255)                                                                   ggacatgccgacgatcacgcggcccaggtagtcgtcaccgatggccgggctggtggctttgccctgttgcaggaagtcgttgTCCAgg                                                                                                                                               <  2:1266184‑M1/6‑1 (MQ=255)                                                                     gCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACCGGTCGAGGTGTTcc                                                                                                                                                  <  2:133256/83‑1 (MQ=255)                                                                     gCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTcc                                                                                                                                                  >  1:133256/1‑83 (MQ=255)                                                                         gACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGgcgc                                                                                                                                            <  1:1050376/85‑1 (MQ=255)                                                                         gACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGgcgc                                                                                                                                            >  2:1050376/1‑85 (MQ=255)                                                                                  aaCCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGt                                                                  >  1:569261/1‑150 (MQ=255)                                                                                    ccACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATc                                                                     <  2:1038663/145‑1 (MQ=255)                                                                                    ccACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATc                                                                     >  1:1038663/1‑145 (MQ=255)                                                                                       caTCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCCGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTgacga                                                             <  1:1140917/150‑1 (MQ=255)                                                                                           cTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTAc                                                         >  2:1126154/1‑150 (MQ=255)                                                                                               tgtACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTgg                                                     <  2:904535/150‑1 (MQ=255)                                                                                                 tACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGc                                                   <  2:1183553/150‑1 (MQ=255)                                                                                                     tcaccgatggccgggctggtggctttgccctgttgcaggaagtcgttgTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGa                                                                                                                >  2:1322819‑M1/49‑85 (MQ=255)                                                                                                     tcaccgatggccgggctggtggctttgccctgttgcaggaagtcgttgTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGa                                                                                                                <  1:1322819‑M1/37‑1 (MQ=255)                                                                                                                  cgaAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCAt                                  <  1:1092454/150‑1 (MQ=255)                                                                                                                   gaAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCAACACCAGGACCACCGGTGCTGACGACCGGAACCGCGTGATCTTCGGCATg                                 >  2:155530/1‑150 (MQ=255)                                                                                                                         gCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGAt                           <  1:1126154/150‑1 (MQ=255)                                                                                                                           cAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAg                                                                                             >  1:793860/1‑82 (MQ=255)                                                                                                                           cAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAg                                                                                             <  2:793860/82‑1 (MQ=255)                                                                                                                           cAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGATAGGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGa                         >  1:373920/1‑150 (MQ=255)                                                                                                                           cAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCACCTGCAGCACATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCGTCGGTGACGACTCCCTGGGCCGCGTGATCGTCGGCATGTCCGATgc                         >  2:246298/1‑149 (MQ=255)                                                                                                                            aaCCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAAGCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGAc                        <  1:112018/150‑1 (MQ=255)                                                                                                                             aCCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACg                       >  1:1005816/1‑150 (MQ=255)                                                                                                                                   cgcAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTtca                 <  1:155530/150‑1 (MQ=255)                                                                                                                                   cgcAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTtca                 <  1:216619/150‑1 (MQ=255)                                                                                                                                        cAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTtcagtcag            >  2:980024/1‑150 (MQ=255)                                                                                                                                           gTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGt                                              <  2:277620/113‑1 (MQ=255)                                                                                                                                           gTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGt                                              >  1:277620/1‑113 (MQ=255)                                                                                                                                               aGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCcagc     >  1:1164676/1‑150 (MQ=255)                                                                                                                                                ggTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGcca                                                                                   <  1:1283412/71‑1 (MQ=255)                                                                                                                                                ggTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGcca                                                                                   >  2:1283412/1‑71 (MQ=255)                                                                                                                                                  tgtTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAgg  <  1:716283/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   AACAACGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGG  >  NC_002947/4715014‑4715308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.