New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4726137 =	44 (0.840)	3 (0.060)	3/236	NT	7.3%	coding (1291/1314 nt)	brnQ	branched‑chain amino acid transporter
	?	NC_002947	4726166 =	34 (0.670)					coding (1262/1314 nt)	brnQ	branched‑chain amino acid transporter

GCATGGTCGATGCGATCAAGGGCAGCAGCCTTGCCCACGTGTTGCCAGACTTCATGGCGCACCTGCCATTGAGTGATGCCGGCATGGCCTGGCTGGTACCTTCGGTGGTGACCCTGGTGGGTGCCGTGGCCTGCGACCGCATGCTCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4726286‑4726137 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaCCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCAC  >  NC_002947/4726166‑4726311                                                                                                                                                                                                                                                                                                          GCATGGTCGATGCGATCAAGGGCAGCAGCCTTGCCCACGTGTTGCCAGACTTCATGGCGCACCTGCCATTGAGTGATGCCGGCATGGCCTGGCTGGTACCTTCGGTGGTGACCCTGGTGGGTGCCGTGGCCTGCGACCGCATGCTCGGCA                                                                                                                                                    >  2:717098/1‑150                  AAGGGCAGCAGCCTTGCCCACGTGTTGCCAGACTTCATGGCGCACCTGCCATTGAGTGATGCCGGCATGGCCTGGCTGGTACCTTCGGTGGTGACCCTGGTGGGTGCCGTGGCCTGCGACCGCATGCTCGGCACCC                                                                                                                                                 >  1:123948/1‑136                  AAGGGCAGCAGCCTTGCCCACGTGTTGCCAGACTTCATGGCGCACCTGCCATTGAGTGATGCCGGCATGGCCTGGCTGGTACCTTCGGTGGTGACCCTGGTGGGTGCCGTGGCCTGCGACCGCATGCTCGGCACCC                                                                                                                                                 <  2:123948/136‑1                                                                 GCCATTGAGTGATGCCGGCATGGCCTGGCTGGTACCTTCGGTGGTGACCCTGGTGGGTGCCGTGGCCTGCGACCGCATGCTCG                                                                                                                                                       <  1:623951/83‑1                                                                 GCCATTGAGTGATGCCGGCATGGCCTGGCTGGTACCTTCGGTGGTGACCCTGGTGGGTGCCGTGGCCTGCGACCGCATGCTCG                                                                                                                                                       >  2:623951/1‑83                                                                                                                CCCTGGTGGGTGCCGTGGCCTGCGACCGCATGCTCGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCA                                     >  2:1322984/1‑150                                                                                                                            CCGTGGCCTGCGACCGCATGCTCGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATG                                                                                             >  1:814807/1‑82                                                                                                                            CCGTGGCCTGCGACCGCATGCTCGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATG                                                                                             <  2:814807/82‑1                                                                                                                                                  CGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCA   >  2:105007/1‑150                                                                                                                                                   GGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCAC  >  2:241096/1‑150                                                                                                                                                                                                                                                                                                          GCATGGTCGATGCGATCAAGGGCAGCAGCCTTGCCCACGTGTTGCCAGACTTCATGGCGCACCTGCCATTGAGTGATGCCGGCATGGCCTGGCTGGTACCTTCGGTGGTGACCCTGGTGGGTGCCGTGGCCTGCGACCGCATGCTCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4726286‑4726137 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaCCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCAC  >  NC_002947/4726166‑4726311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.