New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4726137 =	44 (0.840)	3 (0.060)	3/236	NT	7.3%	coding (1291/1314 nt)	brnQ	branched‑chain amino acid transporter
	?	NC_002947	4726166 =	34 (0.670)					coding (1262/1314 nt)	brnQ	branched‑chain amino acid transporter

TTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGT  >  NC_002947/4726026‑4726315                                                                                                                                             |                                                                                                                                                      tgcgatcaagggcagcagccttgcccacgtgttgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtggtgaccctggtgggTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAggg                                                                                                                                              >  2:1322984‑M1/112‑150 (MQ=255)     ggAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTcac                                                                                                                                          <  2:673627/150‑1 (MQ=255)        aagggcagcagccttgcccacgtgttgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtggtgaccctggtgggtgccgtggcctgcgaccgcatgctcggcaccc                                                                                                                                                     >  1:123948‑M2/134‑136 (MQ=255)        aagggcagcagccttgcccacgtgttgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtggtgaccctggtgggtgccgtggcctgcgaccgcatgctcggcaccc                                                                                                                                                     <  2:123948‑M2/3‑1 (MQ=255)            gggCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGaa                                                                                                                                   <  1:942712/150‑1 (MQ=255)                 ctctTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCAAAGGTAc                                                                                                                              <  2:740797/150‑1 (MQ=255)                  tctTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGCAGGTAcc                                                                                                                             >  1:596561/1‑150 (MQ=255)                  tctTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTAcc                                                                                                                             >  1:221337/1‑150 (MQ=255)                    ttGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGCTAccag                                                                                                                           >  1:1124825/1‑150 (MQ=255)                    ttGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGACGCAGGCCACGGCACCCACCAGGGGCACCACCGAAGGTCccag                                                                                                                           >  1:2829/1‑150 (MQ=255)                             cccTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCAt                                                                                                                  <  2:40558/150‑1 (MQ=255)                              ccTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAgg                                                                                                                                               >  2:809184/1‑120 (MQ=255)                              ccTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAgg                                                                                                                                               <  1:809184/120‑1 (MQ=255)                                             ttCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAAt                                                                                                  >  2:801307/1‑150 (MQ=255)                                             ttCGGCTGGGGGCCGGTGCCGCCCTCATGCTTCCACTTGTCCGGTCAGGCCAGCGCCTGGCGCGGCTTGCCGAGCATGCGGTCGCAGGGCACGGCACCGACCAGGGTCACCACCGGAGGTACCAGCCGGGCCATGCCGGCATCGCTCAAt                                                                                                  <  2:2829/150‑1 (MQ=255)                                             ttCGGCGTGTGGCCGGTGCCGCCCTCATGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAAt                                                                                                  >  2:1090694/1‑150 (MQ=255)                                                ggCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGc                                                                                               <  2:266197/150‑1 (MQ=255)                                                 gCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCa                                                                                              <  1:801307/150‑1 (MQ=255)                                                   ttGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAgg                                                                                            >  2:120877/1‑150 (MQ=255)                                                   ttGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGCCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAgg                                                                                            >  1:1395749/1‑150 (MQ=255)                                                     gtgGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTg                                                                                          <  2:360293/150‑1 (MQ=255)                                                            gTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATg                                                                                   <  1:1090694/150‑1 (MQ=255)                                                                       aGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCAc                                                                                                       <  1:277855/119‑1 (MQ=255)                                                                       aGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCAc                                                                                                       >  2:277855/1‑119 (MQ=255)                                                                       aGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCaa                                                                        >  2:25792/1‑150 (MQ=255)                                                                          cTTCAACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCt                                                                             >  2:377186/1‑142 (MQ=255)                                                                          cTTCAACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCt                                                                             <  1:377186/142‑1 (MQ=255)                                                                                 ttGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTggg                                                                >  1:575420/1‑148 (MQ=255)                                                                                 ttGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTggg                                                                <  2:575420/148‑1 (MQ=255)                                                                                   gTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTg                                                                            <  1:410917/134‑1 (MQ=255)                                                                                   gTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTg                                                                            >  2:410917/1‑134 (MQ=255)                                                                                      cGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGt                                                                                                                                >  2:407061/1‑79 (MQ=255)                                                                                      cGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGt                                                                                                                                <  1:407061/79‑1 (MQ=255)                                                                                       ggTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGgctg                                                        <  1:120877/150‑1 (MQ=255)                                                                                                      ccctggtgggtgccgtggcctgcgaccgcatgctcggcaCCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCa                                         >  2:1322984‑M2/40‑150 (MQ=255)                                                                                                        gcgcgGCTTGCCGAGCATGCGGTCGCACGCCACGGCACCCACCAGGGTCACCACCGAGGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATc                                       <  2:402729/150‑1 (MQ=255)                                                                                                             gggTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCtt                                                <  2:123948‑M1/133‑1 (MQ=255)                                                                                                             gggTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCtt                                                >  1:123948‑M1/4‑136 (MQ=255)                                                                                                                TGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGc                               >  2:717098‑M1/1‑150 (MQ=255)                                                                                                                  ccgtggcctgcgaccgcatgctcggcaCCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATg                                                                                                 >  1:814807‑M2/28‑82 (MQ=255)                                                                                                                  ccgtggcctgcgaccgcatgctcggcaCCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATg                                                                                                 <  2:814807‑M2/55‑1 (MQ=255)                                                                                                                   CGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGc                                                                                               >  2:623951‑M1/1‑83 (MQ=255)                                                                                                                   CGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGc                                                                                               <  1:623951‑M1/83‑1 (MQ=255)                                                                                                                      gCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGaaca                         >  1:154082/1‑150 (MQ=255)                                                                                                                               cGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATa                <  2:1395749/150‑1 (MQ=255)                                                                                                                                     ccACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCACGgctgc                                                       >  1:1155262/1‑105 (MQ=255)                                                                                                                                     ccACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGgctgc                                                       <  2:1155262/105‑1 (MQ=255)                                                                                                                                        cggcaCCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCa       >  2:105007‑M2/6‑150 (MQ=255)                                                                                                                                         ggcaCCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCAc      >  2:241096‑M2/5‑150 (MQ=255)                                                                                                                                             cccaccAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGt  <  1:241096/150‑1 (MQ=255)                                                                                                                                             cccaccAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGt  <  2:596561/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                      TTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGT  >  NC_002947/4726026‑4726315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.