New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4726137 =	44 (0.840)	3 (0.060)	3/236	NT	7.3%	coding (1291/1314 nt)	brnQ	branched‑chain amino acid transporter
	?	NC_002947	4726166 =	34 (0.670)					coding (1262/1314 nt)	brnQ	branched‑chain amino acid transporter

GCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGC  >  NC_002947/4725991‑4726286                                                                                                                                                   |                                                                                                                                                      gtgatgctggtatcgctgttgttcggcatggtcgatgcgatcaagggcagcagccttgcccacgtgttgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtggtgaccctggtgggTGcc                                                                                                                                                    >  2:241096‑M1/147‑150 (MQ=255)  tgatgctggtatcgctgttgttcggcatggtcgatgcgatcaagggcagcagccttgcccacgtgttgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtggtgaccctggtgggTGCCg                                                                                                                                                   >  2:105007‑M1/146‑150 (MQ=255)   cGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGa                                                                                                                                                  <  1:1015197/150‑1 (MQ=255)     aaaCAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGc                                                                                                                                                <  1:176328/150‑1 (MQ=255)           gCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGa                                                                                                                                                  <  2:357777/142‑1 (MQ=255)           gCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGa                                                                                                                                                  >  1:357777/1‑142 (MQ=255)           gCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCACTCAGGCTCCAAATCTACATCGAAGGACAGCGGCGCGCGCGGCTGGCCGAGCATGCgg                                                                                                                                          >  2:727037/1‑150 (MQ=255)               aCAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTGTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCACGCGGCTTGCCGAGCATGCGGgcgc                                                                                                                                      >  1:134777/1‑150 (MQ=255)                cAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCACCTCGCGCGGCTTGCCGAGCATGCGGTCGCa                                                                                                                                     <  2:874022/150‑1 (MQ=255)                 aGCAAAAAGCCCCGCGTCCTTTCGGAGTCGGGGATTTCTTGTCTGTGGGCTGGGCTCTCTCCCTTCTGCTTGTTGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCAATCATGCGGTCGCAg                                                                                                                                    <  2:312906/150‑1 (MQ=255)                 aGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAg                                                                                                                                    <  1:1255097/150‑1 (MQ=255)                  gCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAgg                                                                                                                                   >  1:138700/1‑150 (MQ=255)                                    tgcgatcaagggcagcagccttgcccacgtgttgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtggtgaccctggtgggTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAggg                                                                                                                 >  2:1322984‑M1/112‑150 (MQ=255)                                        ggAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTcac                                                                                                             <  2:673627/150‑1 (MQ=255)                                               gggCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGaa                                                                                                      <  1:942712/150‑1 (MQ=255)                                                    ctctTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCAAAGGTAc                                                                                                 <  2:740797/150‑1 (MQ=255)                                                     tctTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGCAGGTAcc                                                                                                >  1:596561/1‑150 (MQ=255)                                                     tctTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTAcc                                                                                                >  1:221337/1‑150 (MQ=255)                                                       ttGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGCTAccag                                                                                              >  1:1124825/1‑150 (MQ=255)                                                       ttGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGACGCAGGCCACGGCACCCACCAGGGGCACCACCGAAGGTCccag                                                                                              >  1:2829/1‑150 (MQ=255)                                                                cccTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCAt                                                                                     <  2:40558/150‑1 (MQ=255)                                                                 ccTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAgg                                                                                                                  <  1:809184/120‑1 (MQ=255)                                                                 ccTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAgg                                                                                                                  >  2:809184/1‑120 (MQ=255)                                                                                ttCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAAt                                                                     >  2:801307/1‑150 (MQ=255)                                                                                ttCGGCTGGGGGCCGGTGCCGCCCTCATGCTTCCACTTGTCCGGTCAGGCCAGCGCCTGGCGCGGCTTGCCGAGCATGCGGTCGCAGGGCACGGCACCGACCAGGGTCACCACCGGAGGTACCAGCCGGGCCATGCCGGCATCGCTCAAt                                                                     <  2:2829/150‑1 (MQ=255)                                                                                ttCGGCGTGTGGCCGGTGCCGCCCTCATGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAAt                                                                     >  2:1090694/1‑150 (MQ=255)                                                                                   ggCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGc                                                                  <  2:266197/150‑1 (MQ=255)                                                                                    gCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCa                                                                 <  1:801307/150‑1 (MQ=255)                                                                                      ttGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAgg                                                               >  2:120877/1‑150 (MQ=255)                                                                                      ttGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGCCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAgg                                                               >  1:1395749/1‑150 (MQ=255)                                                                                        gtgGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTg                                                             <  2:360293/150‑1 (MQ=255)                                                                                            cattgagtgatgccggcatggcctggctggtaccttcggtggtgaccctggtgggTGCCGAGCATGCGGTCGCAGGCCACgg                                                                                                                             >  1:814807‑M1/56‑82 (MQ=255)                                                                                            cattgagtgatgccggcatggcctggctggtaccttcggtggtgaccctggtgggTGCCGAGCATGCGGTCGCAGGCCACgg                                                                                                                             <  2:814807‑M1/27‑1 (MQ=255)                                                                                               gTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATg                                                      <  1:1090694/150‑1 (MQ=255)                                                                                                          aGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCAc                                                                          >  2:277855/1‑119 (MQ=255)                                                                                                          aGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCAc                                                                          <  1:277855/119‑1 (MQ=255)                                                                                                          aGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCaa                                           >  2:25792/1‑150 (MQ=255)                                                                                                             cTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCAc                                                                                                                               >  1:1326051/1‑63 (MQ=255)                                                                                                             cTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCAc                                                                                                                               <  2:1326051/63‑1 (MQ=255)                                                                                                             cTTCAACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCt                                                <  1:377186/142‑1 (MQ=255)                                                                                                             cTTCAACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCt                                                >  2:377186/1‑142 (MQ=255)                                                                                                                    ttGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTggg                                   <  2:575420/148‑1 (MQ=255)                                                                                                                    ttGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTggg                                   >  1:575420/1‑148 (MQ=255)                                                                                                                      gTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTg                                               >  2:410917/1‑134 (MQ=255)                                                                                                                      gTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTg                                               <  1:410917/134‑1 (MQ=255)                                                                                                                         cGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGt                                                                                                   >  2:407061/1‑79 (MQ=255)                                                                                                                         cGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGt                                                                                                   <  1:407061/79‑1 (MQ=255)                                                                                                                          ggTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGgctg                           <  1:120877/150‑1 (MQ=255)                                                                                                                                           gcgcgGCTTGCCGAGCATGCGGTCGCACGCCACGGCACCCACCAGGGTCACCACCGAGGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATc          <  2:402729/150‑1 (MQ=255)                                                                                                                                                gggTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCtt                   >  1:123948‑M1/4‑136 (MQ=255)                                                                                                                                                gggTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCtt                   <  2:123948‑M1/133‑1 (MQ=255)                                                                                                                                                   TGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGc  >  2:717098‑M1/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGC  >  NC_002947/4725991‑4726286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.