New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4974042 =	72 (1.370)	5 (0.100)	4/234	NT	7.1%	coding (1607/2043 nt)	flgK	flagellar hook‑associated protein FlgK
	?	NC_002947	4974073 =	63 (1.260)					coding (1576/2043 nt)	flgK	flagellar hook‑associated protein FlgK

ATGCCGGTACGCGTGGTGTTCGACGCTGCCAGCGGTGGCTCCCAGGGCTACAAGCTGTTCGACGCCAAGGGTACCCAGATTGGTACCGGCAGCGTGGTGCCTGGGCAGGACAACAAGTTGTCCATCGCCGTGCCGATGCTGGATGCGGCCGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4974196‑4974042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgaTGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGAGCCACCGCTGGCAGCGTCGAACACCACGCG  >  NC_002947/4974073‑4974187                                                                                                                                                                                                                                                                                ATGCCGGTACGCGTGGTGTTCGACGCTGCCAGCGGTGCCTCCCAGGGCTACAAGCTGTTCGACGCCAAGGGTACCCAGATTGGTACCGGCAGCGTGGTGAGGTGTCAGGACAACAAGTTGTCCATCGCCGTGCCGATGCTGGATGCGGCC                                                                                                                          >  1:1155382/1‑150     CGGTACGCGTGGTGTTCGACGCTGCCAGCGGTGGCTCCCAGGGCTACAAGCTGTTCGACGCCAAGGGTACCCAGATTGGTACCGGCAGCGTGGTGCCTGGGCAGGACAACAAGTTGTCCATCGCCGTGCCGATGCTGGATGCGGCCGGCG                                                                                                                      >  2:948519/1‑150                                                                                                                         TCCATCGCCGTGCCGATGCTGGATGCGGCCGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGATCCACCGCTGGCAGCGTCGAACACCACGCG  >  2:254664/1‑150                                                                                                                          CCATCGCCGTGCCGATGCTGGATGCGGCCGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGAGCCACCGCTG                      <  1:1081614/129‑1                                                                                                                          CCATCGCCGTGCCGATGCTGGATGCGGCCGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGAGCCACCGCTG                      >  2:1081614/1‑129                                                                                                                            ATCGCCGTGCCGATGCTGGATGCGGCCGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGAGCCACCGCTG                      <  1:1291429/127‑1                                                                                                                            ATCGCCGTGCCGATGCTGGATGCGGCCGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGAGCCACCGCTG                      >  2:1291429/1‑127                                                                                                                                                                                                                                                                                ATGCCGGTACGCGTGGTGTTCGACGCTGCCAGCGGTGGCTCCCAGGGCTACAAGCTGTTCGACGCCAAGGGTACCCAGATTGGTACCGGCAGCGTGGTGCCTGGGCAGGACAACAAGTTGTCCATCGCCGTGCCGATGCTGGATGCGGCCGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4974196‑4974042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgaTGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGAGCCACCGCTGGCAGCGTCGAACACCACGCG  >  NC_002947/4974073‑4974187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.